Genome Meta Information: Atopobium minutum L3_108_103G1_dasL3_108_103G1_maxbin2.maxbin.038 (GCA_018363815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018363815.1 | ||
| HOMD Taxon-ID | HMT-674 | ||
| Species Name (in use by HOMD) | Atopobium minutum | ||
| Organism Name (as deposited) | HMT-674 Atopobium minutum L3_108_103G1_dasL3_108_103G1_maxbin2.maxbin.038 | ||
| Strain or Isolate | L3_108_103G1_dasL3_108_103G1_maxbin2.maxbin.038 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium; s__Atopobium minutum |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 0.0x | ||
| Contigs |
|
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| Total Sequence Length | 1,648,815 (bp) | ||
| GC Percentage | 48.77 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/363/815/GCA_018363815.1_ASM1836381v1 | ||
| CDS | 1490 | ||
| Genes | 1544 | ||
| mRNA | 1544 | ||
| misc RNA | 7 | ||
| rRNA | 0 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.93 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.94 % | ||
| CheckM2 Contamination | 0.24 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1836381v1 |
| GenBank Assembly Accession | GCA_018363815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018363815.1 [NCBI] |
| BioSample | SAMN17800988 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:19.606 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZND01 |
| NCBI TaxID | 1381 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
