Genome Meta Information: Corynebacterium gottingense PRD07 (GCA_016785885.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016785885.1 | ||
| HOMD Taxon-ID | HMT-207 | ||
| Species Name (in use by HOMD) | Corynebacterium gottingense | ||
| Organism Name (as deposited) | HMT-207 Corynebacterium gottingense PRD07 | ||
| Strain or Isolate | PRD07 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium gottingense |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 209.0x | ||
| Contigs |
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| Total Sequence Length | 2,539,775 (bp) | ||
| GC Percentage | 65.61 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/785/885/GCA_016785885.1_ASM1678588v1 | ||
| CDS | 2285 | ||
| Genes | 2359 | ||
| mRNA | 2359 | ||
| misc RNA | 10 | ||
| rRNA | 7 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.34 % | ||
| CheckM Contamination | 0.04 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.22 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1678588v1 |
| GenBank Assembly Accession | GCA_016785885.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016785885.1 [NCBI] |
| BioSample | SAMN13914623 [NCBI] |
| BioProject | PRJNA602980 [NCBI] |
| Submitter | National Centre for Cell Science |
| Submission Date | 2020-01-23T23:11:05.597 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAADJX01 |
| NCBI TaxID | 2054421 |
| Isolation Source | river water |
| Geo Location | India: Nashik |
