Genome Meta Information: Arthrospira platensis PCC 9108 (GCA_016745315.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016745315.2 | ||
| HOMD Taxon-ID | HMT-229 | ||
| Species Name (in use by HOMD) | Arthrospira platensis | ||
| Organism Name (as deposited) | HMT-229 Arthrospira platensis PCC 9108 | ||
| Strain or Isolate | PCC 9108 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira; s__Limnospira platensis |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 191.0x | ||
| Contigs |
|
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| Total Sequence Length | 6,763,969 (bp) | ||
| GC Percentage | 44.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/745/315/GCA_016745315.2_ASM1674531v2 | ||
| CDS | 6677 | ||
| Genes | 7123 | ||
| mRNA | 7123 | ||
| misc RNA | 392 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.91 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 98.35 % | ||
| CheckM2 Contamination | 0.4 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1674531v2 |
| GenBank Assembly Accession | GCA_016745315.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN10440999 [NCBI] |
| BioProject | PRJNA506019 [NCBI] |
| Submitter | Biological Research Center (CIB-CSIC) |
| Submission Date | 2018-11-19T10:20:03.043 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 147317 |
| Isolation Source | Chenghai Lake |
| Geo Location | China: Cheng-hai, Yunnan |
