Genome Meta Information: Alistipes onderdonkii 1001262B_160229_H2 (GCA_015668835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015668835.1 | ||
| HOMD Taxon-ID | HMT-964 | ||
| Species Name (in use by HOMD) | Alistipes onderdonkii | ||
| Organism Name (as deposited) | HMT-964 Alistipes onderdonkii 1001262B_160229_H2 | ||
| Strain or Isolate | 1001262B_160229_H2 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes onderdonkii |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 53.0x | ||
| Contigs |
|
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| Total Sequence Length | 3,412,381 (bp) | ||
| GC Percentage | 58.45 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/668/835/GCA_015668835.1_ASM1566883v1 | ||
| CDS | 2734 | ||
| Genes | 2794 | ||
| mRNA | 2794 | ||
| misc RNA | 10 | ||
| rRNA | 4 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.45 % | ||
| CheckM Completeness | 99.28 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.19 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1566883v1 |
| GenBank Assembly Accession | GCA_015668835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015668835.1 [NCBI] |
| BioSample | SAMN15533084 [NCBI] |
| BioProject | PRJNA637878 [NCBI] |
| Submitter | Icahn School of Medicine at Mount Sinai |
| Submission Date | 2020-07-14T14:32:22.880 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JADPGS01 |
| NCBI TaxID | 328813 |
| Isolation Source | stool |
| Geo Location | USA |
