Genome Meta Information: Alistipes shahii 1001275B_160808_A9 (GCA_015558405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015558405.1 | ||
| HOMD Taxon-ID | HMT-966 | ||
| Species Name (in use by HOMD) | Alistipes shahii | ||
| Organism Name (as deposited) | HMT-966 Alistipes shahii 1001275B_160808_A9 | ||
| Strain or Isolate | 1001275B_160808_A9 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes shahii |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 53.6x | ||
| Contigs |
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| Total Sequence Length | 3,561,746 (bp) | ||
| GC Percentage | 57.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/558/405/GCA_015558405.1_ASM1555840v1 | ||
| CDS | 2990 | ||
| Genes | 3063 | ||
| mRNA | 3063 | ||
| misc RNA | 18 | ||
| rRNA | 3 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.96 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.97 % | ||
| CheckM2 Contamination | 1.54 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP Site] | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1555840v1 |
| GenBank Assembly Accession | GCA_015558405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015558405.1 [NCBI] |
| BioSample | SAMN15533117 [NCBI] |
| BioProject | PRJNA637878 [NCBI] |
| Submitter | Icahn School of Medicine at Mount Sinai |
| Submission Date | 2020-07-14T14:32:23.386 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JADMNV01 |
| NCBI TaxID | 328814 |
| Isolation Source | stool |
| Geo Location | USA |
