Genome Meta Information: Alistipes shahii D40t1_170626_H5 (GCA_015556995.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015556995.1 | ||
| HOMD Taxon-ID | HMT-966 | ||
| Species Name (in use by HOMD) | Alistipes shahii | ||
| Organism Name (as deposited) | HMT-966 Alistipes shahii D40t1_170626_H5 | ||
| Strain or Isolate | D40t1_170626_H5 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes shahii |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 27.6x | ||
| Contigs |
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| Total Sequence Length | 3,476,415 (bp) | ||
| GC Percentage | 57.83 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/556/995/GCA_015556995.1_ASM1555699v1 | ||
| CDS | 2965 | ||
| Genes | 3039 | ||
| mRNA | 3039 | ||
| misc RNA | 20 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.98 % | ||
| CheckM2 Contamination | 0.76 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1555699v1 |
| GenBank Assembly Accession | GCA_015556995.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015556995.1 [NCBI] |
| BioSample | SAMN15634165 [NCBI] |
| BioProject | PRJNA637878 [NCBI] |
| Submitter | Icahn School of Medicine at Mount Sinai |
| Submission Date | 2020-07-23T18:54:08.420 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JADNNJ01 |
| NCBI TaxID | 328814 |
| Isolation Source | stool |
| Geo Location | USA |
