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Genome Meta Information:
Prevotella
melaninogenica
JCVI_41_bin.15 (GCA_015262365.1)
| HOMD Genome-ID |
GCA_015262365.1
|
| HOMD Taxon-ID |
HMT-469
|
| Species Name (in use by HOMD) |
Prevotella melaninogenica
|
| Organism Name (as deposited) |
HMT-469 Prevotella melaninogenica JCVI_41_bin.15
|
| Strain or Isolate |
JCVI_41_bin.15
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella melaninogenica |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
3.8x
|
| Contigs |
Number of Contigs: 211
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,790,165 (bp) |
| GC Percentage |
40.83
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/365/GCA_015262365.1_ASM1526236v1
|
| CDS |
2144
|
| Genes |
2197
|
| mRNA |
2197
|
| misc RNA |
9
|
| rRNA |
1
|
| tRNA |
42
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.83 %
|
| CheckM Completeness |
97.18 %
|
| CheckM Contamination |
0.79 %
|
| CheckM2 Completeness |
92.58 %
|
| CheckM2 Contamination |
1.31 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1526236v1
|
| GenBank Assembly Accession |
GCA_015262365.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN14570906
[NCBI]
|
| BioProject |
PRJNA624185
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2020-04-09T20:41:07.593
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JABZSZ01
|
| NCBI TaxID |
28132
|
| Isolation Source |
saliva
|
| Geo Location |
USA: UCLA School of Dentistry
|
