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Genome Meta Information:
Arachnia
rubra
P-A-F_MAG_00013 (GCA_013333895.2)
| HOMD Genome-ID |
GCA_013333895.2
|
| HOMD Taxon-ID |
HMT-194
|
| Species Name (in use by HOMD) |
Arachnia rubra
|
| Organism Name (as deposited) |
HMT-194 Arachnia rubra P-A-F_MAG_00013
|
| Strain or Isolate |
P-A-F_MAG_00013
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;
s__Arachnia rubra |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
50.0x
|
| Contigs |
Number of Contigs: 214
|
[Open
in Genome Viewer]
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Sequence]
[Linkout to
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|
|
| Total Sequence Length |
2,996,074 (bp) |
| GC Percentage |
64.64
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/895/GCA_013333895.2_ASM1333389v2
|
| CDS |
2716
|
| Genes |
2782
|
| mRNA |
2782
|
| misc RNA |
17
|
| rRNA |
2
|
| tRNA |
45
|
| tmRNA |
2
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
92.84 %
|
| CheckM Contamination |
1.35 %
|
| CheckM2 Completeness |
93.45 %
|
| CheckM2 Contamination |
0.77 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1333389v2
|
| GenBank Assembly Accession |
GCA_013333895.2
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN14602636
[NCBI]
|
| BioProject |
PRJNA625082
[NCBI]
|
| Submitter |
Marine Biological Laboratory
|
| Submission Date |
2020-04-15T15:40:04.860
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JABCNY02
|
| NCBI TaxID |
1977903
|
| Isolation Source |
dental plaque
|
| Geo Location |
USA: Massachusetts
|
