Genome Meta Information: Alistipes shahii BL-389-WT-23F (GCA_012844205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_012844205.1 | ||
| HOMD Taxon-ID | HMT-966 | ||
| Species Name (in use by HOMD) | Alistipes shahii | ||
| Organism Name (as deposited) | HMT-966 Alistipes shahii BL-389-WT-23F | ||
| Strain or Isolate | BL-389-WT-23F | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes shahii |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 400.0x | ||
| Contigs |
|
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| Total Sequence Length | 3,317,268 (bp) | ||
| GC Percentage | 58.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/844/205/GCA_012844205.1_ASM1284420v1 | ||
| CDS | 2648 | ||
| Genes | 2716 | ||
| mRNA | 2716 | ||
| misc RNA | 12 | ||
| rRNA | 3 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.58 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.98 % | ||
| CheckM2 Contamination | 0.91 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP Site] | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1284420v1 |
| GenBank Assembly Accession | GCA_012844205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_012844205.1 [NCBI] |
| BioSample | SAMN14558239 [NCBI] |
| BioProject | PRJNA561470 [NCBI] |
| Submitter | UniKlinik RWTH Aachen |
| Submission Date | 2020-04-08T07:40:15.320 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABAGP01 |
| NCBI TaxID | 328814 |
| Isolation Source | feces |
| Geo Location | Germany |
