Genome Meta Information: Alistipes onderdonkii 5NYCFAH2 (GCA_006542725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006542725.1 | ||
| HOMD Taxon-ID | HMT-964 | ||
| Species Name (in use by HOMD) | Alistipes onderdonkii | ||
| Organism Name (as deposited) | HMT-964 Alistipes onderdonkii 5NYCFAH2 | ||
| Strain or Isolate | 5NYCFAH2 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes onderdonkii |
||
| Sequencing Technology | Illumina MiSeq; PacBio Sequel | ||
| Genome Coverage | 470.0x | ||
| Contigs |
|
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| Total Sequence Length | 3,312,682 (bp) | ||
| GC Percentage | 57.97 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/542/725/GCA_006542725.1_Aond_3.0 | ||
| CDS | 2787 | ||
| Genes | 2862 | ||
| mRNA | 2862 | ||
| misc RNA | 19 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.95 % | ||
| CheckM Completeness | 98.8 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.39 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Aond_3.0 |
| GenBank Assembly Accession | GCA_006542725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006542725.1 [NCBI] |
| BioSample | SAMD00166234 [NCBI] |
| BioProject | PRJDB8150 [NCBI] |
| Submitter | Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN |
| Submission Date | 2019-04-03T01:00:43.427 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2585117 |
| Isolation Source | |
| Geo Location | Japan |
