Genome Meta Information: Corynebacterium striatum WP1a (GCA_004138065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004138065.1 | ||
| HOMD Taxon-ID | HMT-072 | ||
| Species Name (in use by HOMD) | Corynebacterium striatum | ||
| Organism Name (as deposited) | HMT-072 Corynebacterium striatum WP1a | ||
| Strain or Isolate | WP1a | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium striatum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 60.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,824,576 (bp) | ||
| GC Percentage | 59.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/138/065/GCA_004138065.1_ASM413806v1 | ||
| CDS | 2626 | ||
| Genes | 2697 | ||
| mRNA | 2697 | ||
| misc RNA | 8 | ||
| rRNA | 3 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.64 % | ||
| CheckM Completeness | 99.23 % | ||
| CheckM Contamination | 0.09 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.02 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM413806v1 |
| GenBank Assembly Accession | GCA_004138065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004138065.1 [NCBI] |
| BioSample | SAMN10723573 [NCBI] |
| BioProject | PRJNA420593 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2019-01-10T15:13:06.030 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | SBIF01 |
| NCBI TaxID | 43770 |
| Isolation Source | bloodstream of patient with high level daptomycin resistance |
| Geo Location | USA: Missouri |
