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Genome Meta Information:
Aggregatibacter
aphrophilus
HK83 (GCA_003703745.1)
| HOMD Genome-ID |
GCA_003703745.1
|
| HOMD Taxon-ID |
HMT-545
|
| Species Name (in use by HOMD) |
Aggregatibacter aphrophilus
|
| Organism Name (as deposited) |
HMT-545 Aggregatibacter aphrophilus HK83
|
| Strain or Isolate |
HK83
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;
s__Aggregatibacter aphrophilus |
| Sequencing Technology |
Illumina NextSeq 500
|
| Genome Coverage |
100.0x
|
| Contigs |
Number of Contigs: 121
|
[Open
in Genome Viewer]
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Sequence]
[Linkout to
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|
|
| Total Sequence Length |
2,375,403 (bp) |
| GC Percentage |
42.22
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/703/745/GCA_003703745.1_ASM370374v1
|
| CDS |
2120
|
| Genes |
2234
|
| mRNA |
2234
|
| misc RNA |
53
|
| rRNA |
11
|
| tRNA |
49
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.06 %
|
| CheckM Completeness |
99.55 %
|
| CheckM Contamination |
0.73 %
|
| CheckM2 Completeness |
100 %
|
| CheckM2 Contamination |
0.32 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM370374v1
|
| GenBank Assembly Accession |
GCA_003703745.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_003703745.1
[NCBI]
|
| BioSample |
SAMN09405372
[NCBI]
|
| BioProject |
PRJNA475894
[NCBI]
|
| Submitter |
Umea University
|
| Submission Date |
2018-06-13T09:19:03.643
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
QMGS01
|
| NCBI TaxID |
732
|
| Isolation Source |
saliva
|
| Geo Location |
Denmark
|
