Genome Meta Information: Alistipes shahii AF14-19 (GCA_003461645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003461645.1 | ||
| HOMD Taxon-ID | HMT-966 | ||
| Species Name (in use by HOMD) | Alistipes shahii | ||
| Organism Name (as deposited) | HMT-966 Alistipes shahii AF14-19 | ||
| Strain or Isolate | AF14-19 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes shahii |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100.0x | ||
| Contigs |
|
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| Total Sequence Length | 3,668,313 (bp) | ||
| GC Percentage | 57.23 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/461/645/GCA_003461645.1_ASM346164v1 | ||
| CDS | 3180 | ||
| Genes | 3251 | ||
| mRNA | 3251 | ||
| misc RNA | 17 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 1.57 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM346164v1 |
| GenBank Assembly Accession | GCA_003461645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003461645.1 [NCBI] |
| BioSample | SAMN09734250 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-29T08:47:07.377 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QTXM01 |
| NCBI TaxID | 2292910 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
