Genome Meta Information: Alloscardovia omnicolens UMB0064 (GCA_002847765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002847765.1 | ||
| HOMD Taxon-ID | HMT-198 | ||
| Species Name (in use by HOMD) | Alloscardovia omnicolens | ||
| Organism Name (as deposited) | HMT-198 Alloscardovia omnicolens UMB0064 | ||
| Strain or Isolate | UMB0064 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia; s__Alloscardovia omnicolens |
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| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 228.0x | ||
| Contigs |
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| Total Sequence Length | 1,841,181 (bp) | ||
| GC Percentage | 46.69 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/765/GCA_002847765.1_ASM284776v1 | ||
| CDS | 1559 | ||
| Genes | 1618 | ||
| mRNA | 1618 | ||
| misc RNA | 10 | ||
| rRNA | 2 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.78 % | ||
| CheckM Completeness | 99.94 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 96.39 % | ||
| CheckM2 Contamination | 0.09 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP Site] | ||
| Pangenomes (Beta) |
View in Anvi`o:
Alloscardovia__omnicolens__HMT_198
(Interactive)
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM284776v1 |
| GenBank Assembly Accession | GCA_002847765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002847765.1 [NCBI] |
| BioSample | SAMN08193642 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:04.698 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PKGU01 |
| NCBI TaxID | 419015 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
