Genome Meta Information: Afipia broomeae MED728 (GCA_002689225.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002689225.1 | ||
| HOMD Taxon-ID | HMT-559 | ||
| Species Name (in use by HOMD) | Afipia broomeae | ||
| Organism Name (as deposited) | HMT-559 Afipia broomeae MED728 | ||
| Strain or Isolate | MED728 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia; s__Afipia broomeae |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 5,163,516 (bp) | ||
| GC Percentage | 61.37 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/689/225/GCA_002689225.1_ASM268922v1 | ||
| CDS | 4953 | ||
| Genes | 5042 | ||
| mRNA | 5042 | ||
| misc RNA | 32 | ||
| rRNA | 2 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.1 % | ||
| CheckM Contamination | 1.27 % | ||
| CheckM2 Completeness | 97.69 % | ||
| CheckM2 Contamination | 2.92 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM268922v1 |
| GenBank Assembly Accession | GCA_002689225.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN07618278 [NCBI] |
| BioProject | PRJNA391943 [NCBI] |
| Submitter | Tara Oceans Consortium |
| Submission Date | 2017-09-07T19:28:06.880 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NZFD01 |
| NCBI TaxID | 1871052 |
| Isolation Source | marine water sample |
| Geo Location | Mediterranean Sea |
