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Genome Meta Information:
Prevotella melaninogenica FDAARGOS_306 (GCA_002208725.2)
| HOMD Genome-ID | GCA_002208725.2 |
| HOMD Taxon-ID |
HMT-469
|
| Species Name (in use by HOMD) | Prevotella melaninogenica |
| Organism Name (as deposited) | HMT-469 Prevotella melaninogenica FDAARGOS_306 |
| Strain or Isolate | FDAARGOS_306 |
| GTDB Taxonomy | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella melaninogenica |
| Sequencing Technology | PacBio; Illumina |
| Genome Coverage | 18.0x |
| Contigs |
|
| Total Sequence Length | 3,168,230 (bp) |
| GC Percentage | 40.98 |
| MAG | |
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/208/725/GCA_002208725.2_ASM220872v2 |
| CDS | 2459 |
| Genes | 2534 |
| mRNA | 2534 |
| misc RNA | 9 |
| rRNA | 13 |
| tRNA | 52 |
| tmRNA | 1 |
| CRISPR-cas |
No Available Data |
| Pangenomes (Beta) |
View in Anvi`o: Prevotella__melaninogenica__HMT_469
(Interactive)
View SVG Image
|
|
| Genome Assembly Name | ASM220872v2 |
| GenBank Assembly Accession |
GCA_002208725.2
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_002208725.2
[NCBI]
|
| BioSample |
SAMN06173319
[NCBI]
|
| BioProject |
PRJNA231221
[NCBI]
|
| Submitter | University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center |
| Submission Date | 2016-12-21T16:19:31.003 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | live |
| WGS Project |
|
| NCBI TaxID |
28132
|
| Isolation Source | sputum from South Carolina Dept. of Health and Environmental Control |
| Geo Location | USA: SC |
| ANI (Average Nucluotide Identity) | 99.99 % |
| CheckM Completeness | 98.52 % |
| CheckM Percentile | 100 % |
| CheckM Contamination | 0.7 % |
|
