Genome Meta Information: Alistipes onderdonkii An90 (GCA_002159215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002159215.1 | ||
| HOMD Taxon-ID | HMT-964 | ||
| Species Name (in use by HOMD) | Alistipes onderdonkii | ||
| Organism Name (as deposited) | HMT-964 Alistipes onderdonkii An90 | ||
| Strain or Isolate | An90 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes onderdonkii |
||
| Sequencing Technology | Illumina NextSeq 500 | ||
| Genome Coverage | 269.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,483,340 (bp) | ||
| GC Percentage | 58.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/159/215/GCA_002159215.1_ASM215921v1 | ||
| CDS | 2773 | ||
| Genes | 2835 | ||
| mRNA | 2835 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.8 % | ||
| CheckM Completeness | 99.28 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.2 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM215921v1 |
| GenBank Assembly Accession | GCA_002159215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002159215.1 [NCBI] |
| BioSample | SAMN06473769 [NCBI] |
| BioProject | PRJNA377666 [NCBI] |
| Submitter | Veterinary Research Institute |
| Submission Date | 2017-03-03T11:55:22.453 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NFHB01 |
| NCBI TaxID | 328813 |
| Isolation Source | caecum |
| Geo Location | not applicable |
