Genome Meta Information: Aggregatibacter aphrophilus FDAARGOS_248 (GCA_002083125.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002083125.2 | ||
| HOMD Taxon-ID | HMT-545 | ||
| Species Name (in use by HOMD) | Aggregatibacter aphrophilus | ||
| Organism Name (as deposited) | HMT-545 Aggregatibacter aphrophilus FDAARGOS_248 | ||
| Strain or Isolate | FDAARGOS_248 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter aphrophilus |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 719.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,406,785 (bp) | ||
| GC Percentage | 42.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/083/125/GCA_002083125.2_ASM208312v2 | ||
| CDS | 2266 | ||
| Genes | 2411 | ||
| mRNA | 2411 | ||
| misc RNA | 64 | ||
| rRNA | 20 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.9 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0.95 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.25 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM208312v2 |
| GenBank Assembly Accession | GCA_002083125.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002083125.2 [NCBI] |
| BioSample | SAMN04875574 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center |
| Submission Date | 2016-04-20T14:41:11.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NBTN02 |
| NCBI TaxID | 732 |
| Isolation Source | abscess |
| Geo Location | USA:DC |
