Genome Meta Information: Actinomyces oris F28B1 (GCA_001937425.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001937425.1 | ||
| HOMD Taxon-ID | HMT-144 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-144 Actinomyces oris clade-144 F28B1 | ||
| Strain or Isolate | F28B1 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces acetigenes |
||
| Sequencing Technology | Illumina GAII; 454 | ||
| Genome Coverage | 12.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,278,855 (bp) | ||
| GC Percentage | 68.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/425/GCA_001937425.1_ASM193742v1 | ||
| CDS | 2703 | ||
| Genes | 2774 | ||
| mRNA | 2774 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.83 % | ||
| CheckM Completeness | 99.53 % | ||
| CheckM Contamination | 0.71 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.18 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM193742v1 |
| GenBank Assembly Accession | GCA_001937425.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001937425.1 [NCBI] |
| BioSample | SAMN05898726 [NCBI] |
| BioProject | PRJNA347929 [NCBI] |
| Submitter | Kings College London |
| Submission Date | 2016-10-12T09:54:06.920 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MSKO01 |
| NCBI TaxID | 544580 |
| Isolation Source | Plaque (caries +) |
| Geo Location | United Kingdom: London |
