Genome Meta Information: Aggregatibacter aphrophilus ATCC 19415 (GCA_001680765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001680765.1 | ||
| HOMD Taxon-ID | HMT-545 | ||
| Species Name (in use by HOMD) | Aggregatibacter aphrophilus | ||
| Organism Name (as deposited) | HMT-545 Aggregatibacter aphrophilus ATCC 19415 | ||
| Strain or Isolate | ATCC 19415 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter aphrophilus |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 77.0x | ||
| Contigs |
|
||
| Total Sequence Length | 2,268,672 (bp) | ||
| GC Percentage | 42.18 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/680/765/GCA_001680765.1_ASM168076v1 | ||
| CDS | 2118 | ||
| Genes | 2226 | ||
| mRNA | 2226 | ||
| misc RNA | 57 | ||
| rRNA | 4 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.84 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.07 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM168076v1 |
| GenBank Assembly Accession | GCA_001680765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001680765.1 [NCBI] |
| BioSample | SAMN05327945 [NCBI] |
| BioProject | PRJNA327278 [NCBI] |
| Submitter | Menzies School of Health Research |
| Submission Date | 2016-06-30T01:29:50.446 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MAQF01 |
| NCBI TaxID | 732 |
| Isolation Source | blood |
| Geo Location | United Kingdom:London |
