Genome Meta Information: Streptococcus gordonii SK12 (GCA_001589065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001589065.1 | ||
| HOMD Taxon-ID | HMT-622 | ||
| Species Name (in use by HOMD) | Streptococcus gordonii | ||
| Organism Name (as deposited) | HMT-622 Streptococcus gordonii SK12 | ||
| Strain or Isolate | SK12 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus gordonii |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 2000.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,145,819 (bp) | ||
| GC Percentage | 40.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/589/065/GCA_001589065.1_ASM158906v1 | ||
| CDS | 2052 | ||
| Genes | 2129 | ||
| mRNA | 2129 | ||
| misc RNA | 26 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.9 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.98 % | ||
| CheckM2 Contamination | 0.04 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM158906v1 |
| GenBank Assembly Accession | GCA_001589065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001589065.1 [NCBI] |
| BioSample | SAMN03480703 [NCBI] |
| BioProject | PRJNA280686 [NCBI] |
| Submitter | University of Malaya |
| Submission Date | 2015-04-13T03:56:27.543 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LAWP01 |
| NCBI TaxID | 1302 |
| Isolation Source | oral cavity |
| Geo Location | Denmark |
