Genome Meta Information: Alloscardovia omnicolens 1173_BLON (GCA_001053985.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001053985.1 | ||
| HOMD Taxon-ID | HMT-198 | ||
| Species Name (in use by HOMD) | Alloscardovia omnicolens | ||
| Organism Name (as deposited) | HMT-198 Alloscardovia omnicolens 1173_BLON | ||
| Strain or Isolate | 1173_BLON | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia; s__Alloscardovia omnicolens |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 26.0x | ||
| Contigs |
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| Total Sequence Length | 1,792,971 (bp) | ||
| GC Percentage | 46.86 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/053/985/GCA_001053985.1_ASM105398v1 | ||
| CDS | 1503 | ||
| Genes | 1566 | ||
| mRNA | 1566 | ||
| misc RNA | 10 | ||
| rRNA | 8 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.55 % | ||
| CheckM Completeness | 99.94 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 96.16 % | ||
| CheckM2 Contamination | 0.06 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM105398v1 |
| GenBank Assembly Accession | GCA_001053985.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001053985.1 [NCBI] |
| BioSample | SAMN03197130 [NCBI] |
| BioProject | PRJNA267549 [NCBI] |
| Submitter | University of Washington |
| Submission Date | 2014-11-17T11:35:07.263 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JWAI01 |
| NCBI TaxID | 419015 |
| Isolation Source | missing |
| Geo Location | USA: WA |
