Genome Meta Information: Afipia broomeae NBIMC_P1-C3 (GCA_000568515.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000568515.1 | ||
| HOMD Taxon-ID | HMT-559 | ||
| Species Name (in use by HOMD) | Afipia broomeae | ||
| Organism Name (as deposited) | HMT-559 Afipia broomeae NBIMC_P1-C3 | ||
| Strain or Isolate | NBIMC_P1-C3 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia; s__Afipia broomeae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 141.0x | ||
| Contigs |
|
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| Total Sequence Length | 4,996,806 (bp) | ||
| GC Percentage | 61.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/568/515/GCA_000568515.1_NBIMC_P1-C3 | ||
| CDS | 4768 | ||
| Genes | 4858 | ||
| mRNA | 4858 | ||
| misc RNA | 32 | ||
| rRNA | 3 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.95 % | ||
| CheckM2 Completeness | 99.97 % | ||
| CheckM2 Contamination | 1.12 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | NBIMC_P1-C3 |
| GenBank Assembly Accession | GCA_000568515.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000568515.1 [NCBI] |
| BioSample | SAMN02951893 [NCBI] |
| BioProject | PRJNA197276 [NCBI] |
| Submitter | FDA |
| Submission Date | 2014-08-05T08:58:08.650 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AVBM01 |
| NCBI TaxID | 1320554 |
| Isolation Source | blood |
| Geo Location | USA |
