Genome Meta Information: Alloprevotella sp. HMT-473 F0040 (GCA_000318095.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000318095.2 | ||
| HOMD Taxon-ID | HMT-473 | ||
| Species Name (in use by HOMD) | Alloprevotella sp. HMT-473 | ||
| Organism Name (as deposited) | HMT-473 Alloprevotella sp. HMT-473 F0040 | ||
| Strain or Isolate | F0040 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella; s__Alloprevotella sp000318095 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 226.0x | ||
| Contigs |
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| Total Sequence Length | 2,553,017 (bp) | ||
| GC Percentage | 46.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/095/GCA_000318095.2_ASM31809v2 | ||
| CDS | 2000 | ||
| Genes | 2059 | ||
| mRNA | 2059 | ||
| misc RNA | 11 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.12 % | ||
| CheckM Contamination | 0.37 % | ||
| CheckM2 Completeness | 96.68 % | ||
| CheckM2 Contamination | 0.46 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM31809v2 |
| GenBank Assembly Accession | GCA_000318095.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000318095.2 [NCBI] |
| BioSample | SAMN02436797 [NCBI] |
| BioProject | PRJNA67205 [NCBI] |
| Submitter | Washington University Genome Center |
| Submission Date | 2013-12-04T15:03:53.306 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AMEK01 |
| NCBI TaxID | 1035197 |
| Isolation Source | oral cavity |
| Geo Location | |
