Genome Meta Information: Aggregatibacter actinomycetemcomitans D7S-1 (GCA_000163615.3)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000163615.3 | ||
| HOMD Taxon-ID | HMT-531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans D7S-1 | ||
| Strain or Isolate | D7S-1 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | 454 Illumina MiSeq | ||
| Genome Coverage | 17.6x | ||
| Contigs |
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| Total Sequence Length | 2,308,962 (bp) | ||
| GC Percentage | 44.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/615/GCA_000163615.3_ASM16361v3 | ||
| CDS | 2207 | ||
| Genes | 2495 | ||
| mRNA | 2495 | ||
| misc RNA | 214 | ||
| rRNA | 19 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.77 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.12 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM16361v3 |
| GenBank Assembly Accession | GCA_000163615.3 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000163615.3 [NCBI] |
| BioSample | SAMN02604275 [NCBI] |
| BioProject | PRJNA41903 [NCBI] |
| Submitter | University of Washington Department of Microbiology |
| Submission Date | 2014-01-30T15:13:22.053 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 694569 |
| Isolation Source | |
| Geo Location | |
