HOMD.org Genome Data::Letter Filter Applied (genus with first letter of 'Y') Date: 2022-11-29 Genome-ID Oral_Taxon-ID Genus Species Status No. Contigs Sequencing Center Total Length Oral Pathogen Culture Collection GC % NCBI Genome-ID NCBI BioProject-ID NCBI BioSample-ID Isolate Origin atcc_mn non_atcc_mn Genbank Acc no. Genbank Assembly 16S rRNA 16S rRNA Comment flag_id SEQF1054 827 Yersinia pestis Complete 4 DOE Joint Genome Institute 4,879,836 0 Antiqua JGI 47.71 360102 16645 SAMN02598369 CP000308,CP000310,CP000311,CP000309 GCA_000013825.1 11 SEQF1055 827 Yersinia pestis Complete 4 Wellcome Trust Sanger Institute 4,829,855 0 CO92 47.64 214092 34 SAMEA1705942 AL590842,AL117189,AL109969,AL117211 GCA_000009065.1 21 SEQF1056 827 Yersinia pestis Complete 2 Univ. Wisconsin|University of Wisconsin, Genetics, USA, Madison 4,701,745 0 KIM10+ 47.7 187410 288 SAMN02604093 AE009952, AF074611 GCA_000006645.1 21 SEQF1057 827 Yersinia pestis Complete 3 DOE Joint Genome Institute 4,646,286 0 Nepal516 47.64 377628 16646 SAMN02598370 CP000305,CP000306,CP000307 GCA_000013805.1 21 SEQF1082 827 Yersinia pestis Complete 5 Academy of Military Medical Sciences, The Institute of Microbiology and Epidemio 4,803,217 0 biovar Microtus str. 91001 47.67 229193 10638 SAMN02602970 AE017042,AE017043,AE017044,AE017045,AE017046 GCA_000007885.1 21 SEQF1099 827 Yersinia pestis Complete 3 DOE Joint Genome Institute 4,725,862 0 Pestoides F 47.73 386656 16700 SAMN02598373 CP000668,CP000670,CP000669 GCA_000016445.1 21 SEQF1555 827 Yersinia pestis Complete 3 TIGR 4,687,014 0 Angola 47.61 349746 16067 SAMN02604042 CP000901,CP000900,CP000902 GCA_000018805.1 21 SEQF1556 827 Yersinia pestis High Coverage 10 ERIC 4,825,390 0 CA88-4125 47.63 412420 18241 SAMN02403940 ABCD00000000.1 GCA_000181455.2 21 SEQF1558 827 Yersinia pestis High Coverage 23 ERIC 4,629,080 0 Nepal516 47.61 377628 30503 SAMN02403941 ACNQ00000000.1 GCA_000182485.1 21 SEQF1559 827 Yersinia pestis High Coverage 37 ERIC 4,750,606 0 Pestoides A 47.63 545431 30511 SAMN02403944 ACNT00000000.1 GCA_000182545.1 21 SEQF1560 827 Yersinia pestis High Coverage 69 TIGR 4,841,690 0 biovar Antiqua str. B42003004 47.68 404215 17685 SAMN02404401 AAYU00000000.1 GCA_000169675.1 21 SEQF1561 827 Yersinia pestis High Coverage 75 TIGR 4,847,813 0 biovar Antiqua str. E1979001 47.69 360099 17683 SAMN02404400 AAYV00000000.1 GCA_000169695.1 21 SEQF1562 827 Yersinia pestis High Coverage 98 TIGR 4,838,246 0 biovar Antiqua str. UG05-0454 47.73 404218 17691 SAMN02404404 AAYR00000000.1 GCA_000169615.1 21 SEQF1563 827 Yersinia pestis High Coverage 73 TIGR 4,720,694 0 biovar Mediaevalis str. K1973002 47.63 404216 17687 SAMN02404402 AAYT00000000.1 GCA_000169655.1 21 SEQF1564 827 Yersinia pestis Complete 4 ERIC (Enteropathogen Resource Integration Center)|Los Alamos National Laboratory 4,709,501 0 biovar Medievalis str. Harbin 35 47.6 547048 30505 SAMN02603222 CP001608, CP001609, CP001610, CP001611 GCA_000186725.1 21 SEQF1565 827 Yersinia pestis High Coverage 107 TIGR 4,892,085 0 biovar Orientalis str. F1991016 47.69 404214 17681 SAMN02404399 ABAT00000000.1 GCA_000170275.1 21 SEQF1566 827 Yersinia pestis High Coverage 33 ERIC 4,719,608 0 biovar Orientalis str. India 195 47.57 547047 30507 SAMN02403942 ACNR00000000.1 GCA_000182505.1 21 SEQF1567 827 Yersinia pestis High Coverage 102 TIGR 5,322,065 0 biovar Orientalis str. IP275 48.1 373665 16376 SAMN02404398 AAOS00000000.2 GCA_000168235.2 21 SEQF1568 827 Yersinia pestis High Coverage 80 TIGR 4,977,609 0 biovar Orientalis str. MG05-1020 47.61 404217 17689 SAMN02404403 AAYS00000000.1 GCA_000169635.1 21 SEQF1569 827 Yersinia pestis High Coverage 5 ERIC 4,770,886 0 biovar Orientalis str. PEXU2 47.68 547046 30509 SAMN02403943 ACNS00000000.1 GCA_000182525.1 21 SEQF1844 827 Yersinia pestis High Coverage 9 J. Craig Venter Institute 4,681,648 0 KIM D27 47.6 687916 41469 SAMN02404405 ADDC00000000.1 GCA_000182705.1 11 SEQF2184 827 Yersinia pestis Complete 3 Los Alamos National Lab 4,658,411 0 A1122 47.63 1035377 67155 SAMN02603531 CP002956, CP002957, CP002958 GCA_000222975.1 21 SEQF2185 827 Yersinia pestis Complete 4 State Key Laboratory for Infectious Disease Prevention and Control, Institute for Communicable Disease Control and Prevention 4,812,922 0 D106004 47.63 637382 36507 SAMN02603871 CP001585, CP001586, CP001587, CP001588 GCA_000022805.1 21 SEQF2186 827 Yersinia pestis Complete 4 State Key Laboratory for Infectious Disease Prevention and Control, Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention 4,802,263 0 D182038 47.64 637385 36545 SAMN02603872 CP001589, CP001590, CP001591, CP001592 GCA_000022825.1 21 SEQF2188 827 Yersinia pestis Complete 4 State Key Laboratory for Infectious Disease Prevention and Control, Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention 4,725,788 0 Z176003 47.68 637386 36547 SAMN02603873 CP001595,CP001596,CP001594,CP001593 GCA_000022845.1 21