Forsyth Bioinformatics

BLAST-Based Open-Reference 16S sRNA NGS
Species-Level Read Assignment Pipeline With QIIME Results
CodeCategoryMinimal read count per species (MC)
(Click for detail report)
MC1 (All)MC2MC5MC10MC50MC100
ATotal reads54,97054,97054,97054,97054,97054,970
BTotal samples111111111111
CSamples with reads ≥ 500 reads (S≥500)111111111111
DSamples with reads < 500 reads (S<500)000000
EReads in samples S≥50054,97054,97054,97054,97054,97054,970
FReads in samples S<500 (removed)
GTotal reads assigned52,92552,80452,55452,14049,09246,605
HReads assigned to single species27,24927,22027,11326,95625,22123,961
IReads assigned to multiple species6,4496,4426,4356,4166,2926,019
JReads assigned to novel species19,22719,14219,00618,76817,57916,625
KNumber of single species2071781391164123
LNumber of multi-species28211815106
MNumber of novel species257172123893118
NTotal reads unassigned2,0452,1662,4162,8305,8788,365
OReads excluded (<MC)01213717853,8336,320
PChimeric reads2,0442,0442,0442,0442,0442,044
QReads without BLASTN hits111111
RSingleton reads000000
2.View all read count by samples
3.All data can be downloaded in a compressed ZIP file ZIP file
4.All data are also available on the FTP site for 30 days
5.Please read DOCUMENTATION (pdf)
6.Preferred web browser: Google Chrome or FireFox, especially for 2D and 3D plots
7.Contact: George Chen, Email: tchen\@forsyth.org for questions