Forsyth Bioinformatics

BLAST-Based Open-Reference 16S sRNA NGS
Species-Level Read Assignment Pipeline With QIIME Results
CodeCategoryMinimal read count per species (MC)
(Click for detail report)
MC1 (All)MC2MC5MC10MC50MC100
ATotal reads13,431,31413,431,31413,431,31413,431,31413,431,31413,431,314
BTotal samples777777777777
CSamples with reads ≥ 500 reads (S≥500)777777777777
DSamples with reads < 500 reads (S<500)000000
EReads in samples S≥50013,431,31413,431,31413,431,31413,431,31413,431,31413,431,314
FReads in samples S<500 (removed)000000
GTotal reads assigned12,938,18712,938,06012,934,25312,930,78212,912,69112,898,490
HReads assigned to single species9,513,2149,513,0879,512,6099,511,9939,507,5249,503,566
IReads assigned to multiple species2,766,1412,766,1412,765,8092,765,3622,762,3852,759,073
JReads assigned to novel species658,832658,832655,835653,427642,782635,851
KNumber of single species1,001874701609420363
LNumber of multi-species505505376309186141
MNumber of novel species2,2692,2691,114747268170
NTotal reads unassigned493,127493,254497,061500,532518,623532,824
OReads excluded (<MC)01273,9347,40525,49639,697
PChimeric reads187,396187,396187,396187,396187,396187,396
QReads without BLASTN hits921921921921921921
RSingleton reads304,810304,810304,810304,810304,810304,810
2.View all read count by samples
3.All data can be downloaded in a compressed ZIP file ZIP file
4.All data are also available on the FTP site for 30 days
5.Please read DOCUMENTATION (pdf)
6.Preferred web browser: Google Chrome or FireFox, especially for 2D and 3D plots
7.Contact: George Chen, Email: tchen\@forsyth.org for questions