Species Unique Subsystems Level 1 TF Secondary Metabolism Level 2 BU Phages, Prophages, Transposable elements, Plasmids|Pathogenicity islands TD Motility and Chemotaxis|Motility and Chemotaxis - no subcategory AA Fatty Acids, Lipids, and Isoprenoids|Fatty Acids, Lipids, and Isoprenoids - no subcategory Membrane Transport|Protein secretion system, Type II Regulation and Cell signaling|Quorum sensing and biofilm formation Regulation and Cell signaling|Regulation of virulence Sulfur Metabolism|Inorganic sulfur assimilation Virulence, Disease and Defense|Toxins and superantigens TF Secondary Metabolism|Secondary Metabolism - no subcategory Level 3 BU Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Threonine degradation Phages, Prophages, Transposable elements, Plasmids|Pathogenicity islands|Listeria Pathogenicity Island LIPI-1 extended Phages, Prophages, Transposable elements, Plasmids|Phages, Prophages|IbrA and IbrB: co-activators of prophage gene expression RNA Metabolism|RNA processing and modification|ATP-dependent RNA helicases, bacterial Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase TD Carbohydrates|Monosaccharides|D-galactarate, D-glucarate and D-glycerate catabolism - gjo Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|tRNA-dependent amino acid transfers Membrane Transport|ABC transporters|ABC transporter dipeptide (TC 3.A.1.5.2) Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility Motility and Chemotaxis|Motility and Chemotaxis - no subcategory|Bacterial Chemotaxis Protein Metabolism|Protein degradation|Proteasome bacterial RNA Metabolism|RNA processing and modification|RNA 3@1-terminal phosphate cyclase RNA Metabolism|RNA processing and modification|Ribonucleases in Bacillus RNA Metabolism|Transcription|Rrf2 family transcriptional regulators Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|Cell envelope-associated LytR-CpsA-Psr transcriptional attenuators Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|HPr catabolite repression system Stress Response|Oxidative stress|CoA disulfide thiol-disulfide redox system Stress Response|Stress Response - no subcategory|SigmaB stress responce regulation Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Aminoglycoside adenylyltransferases Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Cadmium resistance AA Carbohydrates|Carbohydrates - no subcategory|VC0266 Carbohydrates|Monosaccharides|D-gluconate and ketogluconates metabolism Carbohydrates|Monosaccharides|L-ascorbate utilization (and related gene clusters) Carbohydrates|Sugar alcohols|Inositol catabolism Carbohydrates|Sugar alcohols|Mannitol Utilization Cell Division and Cell Cycle|Cell Division and Cell Cycle - no subcategory|Intracellular septation in Enterobacteria Cofactors, Vitamins, Prosthetic Groups, Pigments|Quinone cofactors|Ubiquinone Biosynthesis DNA Metabolism|DNA Metabolism - no subcategory|DNA ligases DNA Metabolism|DNA repair|2-phosphoglycolate salvage Fatty Acids, Lipids, and Isoprenoids|Fatty Acids, Lipids, and Isoprenoids - no subcategory|Polyhydroxybutyrate metabolism Membrane Transport|ABC transporters|ABC transporter of unknown substrate X Membrane Transport|ABC transporters|Peptide ABC transport system Sap Membrane Transport|Cation transporters|Copper Transport System Membrane Transport|Membrane Transport - no subcategory|Phosphoglycerate transport system Membrane Transport|Protein secretion system, Type II|Widespread colonization island Miscellaneous|Plant-Prokaryote DOE project|Scaffold proteins for [4Fe-4S] cluster assembly (MRP family) Miscellaneous|Plant-Prokaryote DOE project|Single-Rhodanese-domain proteins Nucleosides and Nucleotides|Purines|Purine nucleotide synthesis regulator Protein Metabolism|Protein biosynthesis|Glycyl-tRNA synthetase Protein Metabolism|Protein folding|Periplasmic disulfide interchange Protein Metabolism|Protein processing and modification|Peptide methionine sulfoxide reductase Regulation and Cell signaling|Quorum sensing and biofilm formation|Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon) Regulation and Cell signaling|Quorum sensing and biofilm formation|Biofilm Adhesin Biosynthesis Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|Orphan regulatory proteins Regulation and Cell signaling|Regulation of virulence|A conserved operon linked to TyrR and possibly involved in virulence Respiration|Respiration - no subcategory|Biogenesis of cytochrome c oxidases Stress Response|Detoxification|Glutathione-dependent pathway of formaldehyde detoxification Stress Response|Detoxification|Tellurite resistance: Chromosomal determinants Stress Response|Osmotic stress|Osmotic stress cluster Stress Response|Oxidative stress|Glutathione: Biosynthesis and gamma-glutamyl cycle Stress Response|Oxidative stress|Glutathione: Redox cycle Stress Response|Oxidative stress|NADPH:quinone oxidoreductase 2 Stress Response|Oxidative stress|Protection from Reactive Oxygen Species Stress Response|Stress Response - no subcategory|Universal stress protein family Sulfur Metabolism|Inorganic sulfur assimilation|Sulfite reduction-associated complex DsrMKJOP and co-clustering genes Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Copper homeostasis Virulence, Disease and Defense|Toxins and superantigens|Cytolethal distending toxin of Campylobacter jejuni PG Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Lysine fermentation Amino Acids and Derivatives|Proline and 4-hydroxyproline|Proline, 4-hydroxyproline uptake and utilization Stress Response|Stress Response - no subcategory|Dimethylarginine metabolism Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Resistance to Vancomycin TF Cell Wall and Capsule|Gram-Positive cell wall components|Polyglycerolphosphate lipoteichoic acid biosynthesis DNA Metabolism|CRISPs|CRISPR-associated cluster Secondary Metabolism|Secondary Metabolism - no subcategory|Lanthionine Synthetases Virulence, Disease and Defense|Bacteriocins, ribosomally synthesized antibacterial peptides|Tolerance to colicin E2 Level 4 BU Amino Acids and Derivatives|Amino Acids and Derivatives - no subcategory|Creatine and Creatinine Degradation|Creatinine amidohydrolase (EC 3.5.2.10) Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine Biosynthesis -- gjo|N-acetylornithine carbamoyltransferase (EC 2.1.3.9) Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine and Ornithine Degradation|Biosynthetic arginine decarboxylase (EC 4.1.1.19) Amino Acids and Derivatives|Aromatic amino acids and derivatives|Aromatic amino acid interconversions with aryl acids|Phenylacetate-coenzyme A ligase (EC 6.2.1.30) Amino Acids and Derivatives|Aromatic amino acids and derivatives|Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more.|Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) Amino Acids and Derivatives|Aromatic amino acids and derivatives|Tryptophan synthesis|Indole-3-glycerol phosphate synthase (EC 4.1.1.48) Amino Acids and Derivatives|Aromatic amino acids and derivatives|Tryptophan synthesis|Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Amino Acids and Derivatives|Branched-chain amino acids|Branched-Chain Amino Acid Biosynthesis|Dihydroxy-acid dehydratase (EC 4.2.1.9) Amino Acids and Derivatives|Histidine Metabolism|Histidine Biosynthesis|ATP phosphoribosyltransferase (EC 2.4.2.17) Amino Acids and Derivatives|Histidine Metabolism|Histidine Biosynthesis|Histidinol dehydrogenase (EC 1.1.1.23) Amino Acids and Derivatives|Histidine Metabolism|Histidine Biosynthesis|Histidinol-phosphate aminotransferase (EC 2.6.1.9) Amino Acids and Derivatives|Histidine Metabolism|Histidine Biosynthesis|Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) Amino Acids and Derivatives|Histidine Metabolism|Histidine Biosynthesis|Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Cysteine Biosynthesis|Adenylylsulfate kinase (EC 2.7.1.25) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Cysteine Biosynthesis|Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Cysteine Biosynthesis|Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Lysine Biosynthesis DAP Pathway|L,L-diaminopimelate aminotransferase (EC 2.6.1.83) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Threonine degradation|Threonine dehydrogenase and related Zn-dependent dehydrogenases Carbohydrates|Aminosugars|Chitin and N-acetylglucosamine utilization|Chitinase (EC 3.2.1.14) Carbohydrates|Central carbohydrate metabolism|Pyruvate Alanine Serine Interconversions|Alanine dehydrogenase (EC 1.4.1.1) Carbohydrates|Central carbohydrate metabolism|TCA Cycle|Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Carbohydrates|Di- and oligosaccharides|Maltose and Maltodextrin Utilization|Maltodextrin glucosidase (EC 3.2.1.20) Carbohydrates|Di- and oligosaccharides|Maltose and Maltodextrin Utilization|Maltose operon transcriptional repressor MalR, LacI family Carbohydrates|Fermentation|Acetolactate synthase subunits|Acetolactate synthase small subunit (EC 2.2.1.6) Carbohydrates|Monosaccharides|D-Galacturonate and D-Glucuronate Utilization|Altronate oxidoreductase (EC 1.1.1.58) Carbohydrates|Monosaccharides|D-Galacturonate and D-Glucuronate Utilization|Rhamnogalacturonides degradation protein RhiN Carbohydrates|Monosaccharides|L-Arabinose utilization|Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) Carbohydrates|Monosaccharides|L-Arabinose utilization|Hypothetical glycoside hydrolase, family 43, similar to arabinosidase Carbohydrates|Monosaccharides|L-Arabinose utilization|L-arabinose isomerase (EC 5.3.1.4) Carbohydrates|Monosaccharides|L-Arabinose utilization|Protein AraJ precursor Carbohydrates|Monosaccharides|L-Arabinose utilization|Ribulokinase (EC 2.7.1.16) Carbohydrates|Monosaccharides|Mannose Metabolism|Alpha-mannosidase (EC 3.2.1.24) Carbohydrates|Monosaccharides|Mannose Metabolism|Endo-1,4-beta-mannosidase Carbohydrates|Monosaccharides|Xylose utilization|Alpha-xylosidase (EC 3.2.1.-) Carbohydrates|Monosaccharides|Xylose utilization|Beta-xylosidase (EC 3.2.1.37) Carbohydrates|Monosaccharides|Xylose utilization|Xyloside transporter XynT Carbohydrates|One-carbon Metabolism|Serine-glyoxylate cycle|Aconitate hydratase (EC 4.2.1.3) Carbohydrates|One-carbon Metabolism|Serine-glyoxylate cycle|Citrate synthase (si) (EC 2.3.3.1) Carbohydrates|Polysaccharides|Cellulosome|Alpha-amylase (Neopullulanase) SusA (EC 3.2.1.135) Cell Wall and Capsule|Gram-Positive cell wall components|Teichoic and lipoteichoic acids biosynthesis|CDP-glycerol: N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenyl glycerophosphotransferase Cell Wall and Capsule|Gram-Positive cell wall components|Teichoic and lipoteichoic acids biosynthesis|D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13) Cell Wall and Capsule|Gram-Positive cell wall components|Teichuronic acid biosynthesis|Teichuronic acid biosynthesis protein TuaE, putative secreted polysaccharide polymerase Cofactors, Vitamins, Prosthetic Groups, Pigments|Coenzyme A|Coenzyme A Biosynthesis|Pantothenate kinase type II, eukaryotic (EC 2.7.1.33) Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|5-FCL-like protein|Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Fatty Acid Biosynthesis FASII|Acyl carrier protein phosphodiesterase (EC 3.1.4.14) Miscellaneous|Miscellaneous - no subcategory|Broadly distributed proteins not in subsystems|YbbL ABC transporter ATP-binding protein Miscellaneous|Miscellaneous - no subcategory|Broadly distributed proteins not in subsystems|YbbM seven transmembrane helix protein Miscellaneous|Miscellaneous - no subcategory|Muconate lactonizing enzyme family|L-alanyl-gamma-D-glutamyl-L-diamino acid endopeptidase Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Ammonia assimilation|Ammonium transporter family Nucleosides and Nucleotides|Purines|De Novo Purine Biosynthesis|Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) Phages, Prophages, Transposable elements, Plasmids|Pathogenicity islands|Listeria Pathogenicity Island LIPI-1 extended|Phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) Phages, Prophages, Transposable elements, Plasmids|Phages, Prophages|IbrA and IbrB: co-activators of prophage gene expression|Co-activator of prophage gene expression IbrA Phages, Prophages, Transposable elements, Plasmids|Phages, Prophages|IbrA and IbrB: co-activators of prophage gene expression|Co-activator of prophage gene expression IbrB Phages, Prophages, Transposable elements, Plasmids|Transposable elements|Conjugative transposon, Bacteroidales|Conjugative transposon protein TraH Phosphorus Metabolism|Phosphorus Metabolism - no subcategory|Phosphate metabolism|Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) Phosphorus Metabolism|Phosphorus Metabolism - no subcategory|Phosphate metabolism|Phosphate transport system permease protein PstA (TC 3.A.1.7.1) Phosphorus Metabolism|Phosphorus Metabolism - no subcategory|Phosphate metabolism|Phosphate transport system permease protein PstC (TC 3.A.1.7.1) Phosphorus Metabolism|Phosphorus Metabolism - no subcategory|Phosphate metabolism|Phosphate transport system regulatory protein PhoU Potassium metabolism|Potassium metabolism - no subcategory|Potassium homeostasis|Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1) Potassium metabolism|Potassium metabolism - no subcategory|Potassium homeostasis|Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) Potassium metabolism|Potassium metabolism - no subcategory|Potassium homeostasis|Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) Protein Metabolism|Protein degradation|Metallocarboxypeptidases (EC 3.4.17.-)|Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) Protein Metabolism|Protein processing and modification|G3E family of P-loop GTPases (metallocenter biosynthesis)|Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family Protein Metabolism|Protein processing and modification|N-linked Glycosylation in Bacteria|Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) RNA Metabolism|RNA processing and modification|ATP-dependent RNA helicases, bacterial|ATP-dependent RNA helicase RhlE RNA Metabolism|Transcription|Transcription factors bacterial|Transcription antitermination protein UpdY RNA Metabolism|Transcription|Transcription initiation, bacterial sigma factors|RNA polymerase sigma-70 factor Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|LysR-family proteins in Escherichia coli|LysR family transcriptional regulator YeiE Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase|NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase|NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase|NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase|NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase|NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase|NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase|NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase|NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) Respiration|Electron donating reactions|NADH ubiquinone oxidoreductase|NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Thiol:disulfide oxidoreductase related to ResA Stress Response|Osmotic stress|Osmoregulation|Aquaporin Z Stress Response|Oxidative stress|Oxidative stress|Zinc uptake regulation protein ZUR Sulfur Metabolism|Sulfur Metabolism - no subcategory|Galactosylceramide and Sulfatide metabolism|Arylsulfatase (EC 3.1.6.1) Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Beta-lactamase|Beta-lactamase (Cephalosporinase) (EC 3.5.2.6) Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Multidrug Resistance Efflux Pumps|RND efflux system, inner membrane transporter CmeB Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Multidrug Resistance Efflux Pumps|RND efflux system, membrane fusion protein CmeA TD Amino Acids and Derivatives|Alanine, serine, and glycine|Glycine and Serine Utilization|Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) Amino Acids and Derivatives|Alanine, serine, and glycine|Glycine and Serine Utilization|Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine and Ornithine Degradation|Arginine deiminase (EC 3.5.3.6) Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine and Ornithine Degradation|Ornithine cyclodeaminase (EC 4.3.1.12) Amino Acids and Derivatives|Aromatic amino acids and derivatives|Phenylalanine and Tyrosine Branches from Chorismate|Chorismate mutase II (EC 5.4.99.5) Carbohydrates|Carbohydrates - no subcategory|Carbon storage regulator|Flagellar assembly factor FliW Carbohydrates|Central carbohydrate metabolism|Entner-Doudoroff Pathway|Hexokinase (EC 2.7.1.1) Carbohydrates|Central carbohydrate metabolism|Glycolysis and Gluconeogenesis|Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, alpha subunit (EC 2.7.1.90) Carbohydrates|Central carbohydrate metabolism|Pyruvate Alanine Serine Interconversions|Alanine racemase (EC 5.1.1.1) Carbohydrates|Central carbohydrate metabolism|Pyruvate Alanine Serine Interconversions|L-serine dehydratase, alpha subunit (EC 4.3.1.17) Carbohydrates|Central carbohydrate metabolism|Pyruvate Alanine Serine Interconversions|L-serine dehydratase, beta subunit (EC 4.3.1.17) Carbohydrates|Central carbohydrate metabolism|Pyruvate metabolism I: anaplerotic reactions, PEP|Malate Na(+) symporter Carbohydrates|Central carbohydrate metabolism|Pyruvate metabolism I: anaplerotic reactions, PEP|Phosphoenolpyruvate synthase (EC 2.7.9.2) Carbohydrates|Central carbohydrate metabolism|Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate|Aldehyde dehydrogenase (EC 1.2.1.3) Carbohydrates|Di- and oligosaccharides|Maltose and Maltodextrin Utilization|Oligo-1,6-glucosidase (EC 3.2.1.10) Carbohydrates|Fermentation|Fermentations: Lactate|L-lactate dehydrogenase (EC 1.1.1.27) Carbohydrates|Monosaccharides|D-galactarate, D-glucarate and D-glycerate catabolism - gjo|2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) Carbohydrates|Monosaccharides|Deoxyribose and Deoxynucleoside Catabolism|Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) Carbohydrates|Polysaccharides|Glycogen metabolism|Glycogen branching enzyme, GH-57-type, archaeal (EC 2.4.1.18) Carbohydrates|Sugar alcohols|Glycerol and Glycerol-3-phosphate Uptake and Utilization|Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) Carbohydrates|Sugar alcohols|Glycerol and Glycerol-3-phosphate Uptake and Utilization|NADH peroxidase (EC 1.11.1.1) Carbohydrates|Sugar alcohols|Glycerol and Glycerol-3-phosphate Uptake and Utilization|Probable glycerol transport protein Cell Division and Cell Cycle|Checkpoint control|Bacterial checkpoint-control-related cluster|Uncharacterized secreted protein associated with spyDAC Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|Peptidoglycan Biosynthesis|Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|Peptidoglycan biosynthesis--gjo|UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|tRNA-dependent amino acid transfers|tRNA-dependent lipid II--amino acid ligase Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Folate Biosynthesis|Thymidylate synthase thyX (EC 2.1.1.-) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Cobalamin biosynthesis protein CbiG Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Cobalt-precorrin-3b C17-methyltransferase Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Cobalt-precorrin-6 synthase, anaerobic Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Cobalt-precorrin-6x reductase (EC 1.3.1.54) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Vitamin B12 ABC transporter, ATPase component BtuD DNA Metabolism|CRISPs|CRISPRs|CRISPR-associated protein, Csn2 family DNA Metabolism|DNA Metabolism - no subcategory|DNA structural proteins, bacterial|Chromosome partition protein smc DNA Metabolism|DNA repair|Uracil-DNA glycosylase|Uracil-DNA glycosylase, family 4 Dormancy and Sporulation|Dormancy and Sporulation - no subcategory|Sporulation-associated proteins with broader functions|Protein of unknown function identified by role in sporulation (SpoVG) Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Fatty Acid Biosynthesis FASII|Holo-[acyl-carrier protein] synthase (EC 2.7.8.7) Fatty Acids, Lipids, and Isoprenoids|Isoprenoids|Polyprenyl Diphosphate Biosynthesis|Heptaprenyl diphosphate synthase component I (EC 2.5.1.30) Membrane Transport|ABC transporters|ABC transporter alkylphosphonate (TC 3.A.1.9.1)|Phosphonate ABC transporter permease protein phnE1 (TC 3.A.1.9.1) Membrane Transport|ABC transporters|ABC transporter alkylphosphonate (TC 3.A.1.9.1)|Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) Membrane Transport|ABC transporters|ABC transporter dipeptide (TC 3.A.1.5.2)|Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) Membrane Transport|ABC transporters|ABC transporter dipeptide (TC 3.A.1.5.2)|Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) Membrane Transport|ABC transporters|ABC transporter dipeptide (TC 3.A.1.5.2)|Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) Membrane Transport|ABC transporters|ABC transporter dipeptide (TC 3.A.1.5.2)|Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) Membrane Transport|Cation transporters|Transport of Nickel and Cobalt|Predicted cobalt ABC transporter periplasmic component Membrane Transport|Membrane Transport - no subcategory|ECF class transporters|Duplicated ATPase component BL0693 of energizing module of predicted ECF transporter Membrane Transport|Membrane Transport - no subcategory|ECF class transporters|Substrate-specific component BL0695 of predicted ECF transporter Membrane Transport|Membrane Transport - no subcategory|ECF class transporters|Substrate-specific component BioY of biotin ECF transporter Membrane Transport|Membrane Transport - no subcategory|ECF class transporters|Transmembrane component BL0694 of energizing module of predicted ECF transporter Membrane Transport|Membrane Transport - no subcategory|ECF class transporters|Transmembrane component BioN of energizing module of biotin ECF transporter Miscellaneous|Miscellaneous - no subcategory|Phosphoglycerate mutase protein family|Carboxyl-terminal protease (EC 3.4.21.102) Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar basal-body rod modification protein FlgD Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar biosynthesis protein FlhA Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar biosynthesis protein FlhB Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar biosynthesis protein FlhF Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar biosynthesis protein FliR Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar motor rotation protein MotA Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar motor rotation protein MotB Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar motor switch protein FliM Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar motor switch protein FliN Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellar synthesis regulator FleN Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Flagellum-specific ATP synthase FliI Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellar motility|Signal transduction histidine kinase CheA (EC 2.7.3.-) Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar M-ring protein FliF Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar assembly protein FliH Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar basal-body rod protein FlgB Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar basal-body rod protein FlgC Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar basal-body rod protein FlgF Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar basal-body rod protein FlgG Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar biosynthesis protein FliL Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar biosynthesis protein FliP Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar biosynthesis protein FliQ Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar biosynthesis protein FliS Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar biosynthesis protein FliZ Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar hook protein FlgE Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar hook-associated protein FlgK Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar hook-associated protein FlgL Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar hook-associated protein FliD Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar hook-basal body complex protein FliE Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar hook-length control protein FliK Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar motor switch protein FliG Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar protein FlbB Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar protein FlbD Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellar protein FliJ Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellin protein FlaA Motility and Chemotaxis|Flagellar motility in Prokaryota|Flagellum|Flagellin protein FlaG Motility and Chemotaxis|Motility and Chemotaxis - no subcategory|Bacterial Chemotaxis|Chemotaxis protein CheX Motility and Chemotaxis|Motility and Chemotaxis - no subcategory|Bacterial Chemotaxis|Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) Motility and Chemotaxis|Motility and Chemotaxis - no subcategory|Bacterial Chemotaxis|Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) Motility and Chemotaxis|Motility and Chemotaxis - no subcategory|Bacterial Chemotaxis|Positive regulator of CheA protein activity (CheW) Nucleosides and Nucleotides|Purines|De Novo Purine Biosynthesis|Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) Nucleosides and Nucleotides|Purines|De Novo Purine Biosynthesis|Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) Nucleosides and Nucleotides|Purines|Purine Utilization|Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) Nucleosides and Nucleotides|Purines|Purine Utilization|Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4) Nucleosides and Nucleotides|Purines|Purine conversions|Adenosine deaminase (EC 3.5.4.4) Phosphorus Metabolism|Phosphorus Metabolism - no subcategory|Phosphonate metabolism|Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) Potassium metabolism|Potassium metabolism - no subcategory|Potassium homeostasis|Glutathione-regulated potassium-efflux system ancillary protein KefG Protein Metabolism|Protein biosynthesis|tRNA aminoacylation, Lys|Lysyl-tRNA synthetase (class I) (EC 6.1.1.6) Protein Metabolism|Protein biosynthesis|tRNA aminoacylation, Pro|tRNA proofreading protein STM4549 Protein Metabolism|Protein biosynthesis|tRNAs|tRNA-Ala-CGC Protein Metabolism|Protein biosynthesis|tRNAs|tRNA-Arg-GCG Protein Metabolism|Protein degradation|Aminopeptidases (EC 3.4.11.-)|Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.24) Protein Metabolism|Protein degradation|Omega peptidases (EC 3.4.19.-)|Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) Protein Metabolism|Protein degradation|Proteasome bacterial|Site-specific tyrosine recombinase Protein Metabolism|Protein degradation|Protein degradation|Deblocking aminopeptidase (EC 3.4.11.-) Protein Metabolism|Protein degradation|Proteolysis in bacteria, ATP-dependent|Nucleotide excision repair protein, with UvrB/UvrC motif Protein Metabolism|Protein degradation|Putative TldE-TldD proteolytic complex|TldD family protein, Beta/Gamma-proteobacterial subgroup Protein Metabolism|Protein degradation|Putative TldE-TldD proteolytic complex|TldE/PmbA family protein, Beta/Gamma-proteobacterial subgroup Protein Metabolism|Protein processing and modification|Lipoprotein Biosynthesis|Apolipoprotein N-acyltransferase (EC 2.3.1.-) Protein Metabolism|Protein processing and modification|N-linked Glycosylation in Bacteria|Phospholipid-lipopolysaccharide ABC transporter Protein Metabolism|Selenoproteins|Glycine reductase, sarcosine reductase and betaine reductase|Glycine/sarcosine/betaine reductase component C chain 1 Protein Metabolism|Selenoproteins|Glycine reductase, sarcosine reductase and betaine reductase|Glycine/sarcosine/betaine reductase component C chain 2 RNA Metabolism|RNA processing and modification|RNA 3@1-terminal phosphate cyclase|RNA-2@1,3@1-PO4:RNA-5@1-OH ligase RNA Metabolism|RNA processing and modification|Ribonucleases in Bacillus|Metallo-beta-lactamase family protein, RNA-specific RNA Metabolism|RNA processing and modification|tRNA modification Bacteria|tRNA S(4)U 4-thiouridine synthase (former ThiI) RNA Metabolism|Transcription|Rrf2 family transcriptional regulators|Rrf2 family transcriptional regulator, group III Regulation and Cell signaling|Programmed Cell Death and Toxin-antitoxin Systems|Phd-Doc, YdcE-YdcD toxin-antitoxin (programmed cell death) systems|Death on curing protein, Doc toxin Regulation and Cell signaling|Programmed Cell Death and Toxin-antitoxin Systems|Phd-Doc, YdcE-YdcD toxin-antitoxin (programmed cell death) systems|Prevent host death protein, Phd antitoxin Regulation and Cell signaling|Programmed Cell Death and Toxin-antitoxin Systems|Toxin-antitoxin replicon stabilization systems|VapB protein (antitoxin to VapC) Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|Cell envelope-associated LytR-CpsA-Psr transcriptional attenuators|Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily S (as in PMID19099556) Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|HPr catabolite repression system|Catabolite repression HPr-like protein Crh Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|HPr catabolite repression system|HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|LysR-family proteins in Escherichia coli|Chromosome initiation inhibitor Respiration|Electron donating reactions|NiFe hydrogenase maturation|[NiFe] hydrogenase nickel incorporation protein HypA Respiration|Respiration - no subcategory|Formate hydrogenase|Formate dehydrogenase-O, major subunit (EC 1.2.1.2) Stress Response|Osmotic stress|Choline and Betaine Uptake and Betaine Biosynthesis|Sarcosine oxidase alpha subunit (EC 1.5.3.1) Stress Response|Oxidative stress|CoA disulfide thiol-disulfide redox system|CoA-disulfide reductase (EC 1.8.1.14) Stress Response|Oxidative stress|Rubrerythrin|Probable peroxiredoxin (EC 1.11.1.15) Stress Response|Oxidative stress|Rubrerythrin|Superoxide reductase (EC 1.15.1.2) Stress Response|Stress Response - no subcategory|SigmaB stress responce regulation|RNA polymerase sigma factor SigB Stress Response|Stress Response - no subcategory|SigmaB stress responce regulation|Serine phosphatase RsbU, regulator of sigma subunit Stress Response|Stress Response - no subcategory|SigmaB stress responce regulation|Serine-protein kinase RsbW (EC 2.7.11.1) Virulence, Disease and Defense|Invasion and intracellular resistance|Mycobacterium virulence operon involved in an unknown function with a Jag Protein and YidC and YidD|RNA-binding protein Jag Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Aminoglycoside adenylyltransferases|Aminoglycoside N6@1-acetyltransferase (EC 2.3.1.82) Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Beta-lactamase|Metal-dependent hydrolases of the beta-lactamase superfamily I Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Cadmium resistance|Cadmium efflux system accessory protein AA Amino Acids and Derivatives|Alanine, serine, and glycine|Alanine biosynthesis|Chaperone protein HscA Amino Acids and Derivatives|Alanine, serine, and glycine|Alanine biosynthesis|Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Amino Acids and Derivatives|Alanine, serine, and glycine|Alanine biosynthesis|Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Amino Acids and Derivatives|Alanine, serine, and glycine|Alanine biosynthesis|Ferredoxin, 2Fe-2S Amino Acids and Derivatives|Alanine, serine, and glycine|Alanine biosynthesis|HTH-type transcriptional regulator IlvY Amino Acids and Derivatives|Alanine, serine, and glycine|Alanine biosynthesis|Iron binding protein IscA for iron-sulfur cluster assembly Amino Acids and Derivatives|Alanine, serine, and glycine|Alanine biosynthesis|Iron-sulfur cluster assembly scaffold protein IscU Amino Acids and Derivatives|Alanine, serine, and glycine|Alanine biosynthesis|Iron-sulfur cluster regulator IscR Amino Acids and Derivatives|Amino Acids and Derivatives - no subcategory|Creatine and Creatinine Degradation|Cytosine deaminase (EC 3.5.4.1) Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine and Ornithine Degradation|Arginine ABC transporter, ATP-binding protein ArtP Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine and Ornithine Degradation|Arginine ABC transporter, periplasmic arginine-binding protein ArtI Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine and Ornithine Degradation|Arginine ABC transporter, permease protein ArtM Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine and Ornithine Degradation|Arginine ABC transporter, permease protein ArtQ Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine and Ornithine Degradation|Arginine/ornithine antiporter ArcD Amino Acids and Derivatives|Aromatic amino acids and derivatives|Chorismate Synthesis|Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) Amino Acids and Derivatives|Aromatic amino acids and derivatives|Phenylalanine and Tyrosine Branches from Chorismate|Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57) Amino Acids and Derivatives|Aromatic amino acids and derivatives|Phenylalanine and Tyrosine Branches from Chorismate|Transcriptional repressor protein TyrR Amino Acids and Derivatives|Aromatic amino acids and derivatives|Tryptophan synthesis|Anthranilate synthase, amidotransferase component (EC 4.1.3.27) Amino Acids and Derivatives|Aromatic amino acids and derivatives|Tryptophan synthesis|Transcriptional repressor protein TrpR Amino Acids and Derivatives|Glutamine, glutamate, aspartate, asparagine; ammonia assimilation|Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis|Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Cysteine Biosynthesis|Cys regulon transcriptional activator CysB Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Cysteine Biosynthesis|Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Cysteine Biosynthesis|Sulfate transporter, CysZ-type Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Lysine Biosynthesis DAP Pathway|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Lysine Biosynthesis DAP Pathway|N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Methionine Biosynthesis|5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Methionine Biosynthesis|Cystathionine beta-lyase (EC 4.4.1.8) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Methionine Biosynthesis|Cystathionine gamma-synthase (EC 2.5.1.48) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Methionine Biosynthesis|Homoserine O-acetyltransferase (EC 2.3.1.31) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Methionine Biosynthesis|Methionine ABC transporter permease protein Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Methionine Biosynthesis|Methionine ABC transporter substrate-binding protein Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Methionine Biosynthesis|Methionine repressor MetJ Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Methionine Biosynthesis|Transcriptional activator MetR Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Threonine and Homoserine Biosynthesis|Homoserine kinase (EC 2.7.1.39) Amino Acids and Derivatives|Proline and 4-hydroxyproline|Proline Synthesis|Glutamate 5-kinase (EC 2.7.2.11) Carbohydrates|Aminosugars|Chitin and N-acetylglucosamine utilization|N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family Carbohydrates|Carbohydrates - no subcategory|VC0266|Hypothetical protein VC0266 (sugar utilization related?) Carbohydrates|Central carbohydrate metabolism|Dehydrogenase complexes|Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) Carbohydrates|Central carbohydrate metabolism|Dehydrogenase complexes|Pyruvate dehydrogenase E1 component (EC 1.2.4.1) Carbohydrates|Central carbohydrate metabolism|Glycolysis and Gluconeogenesis|Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) Carbohydrates|Central carbohydrate metabolism|Glycolysis and Gluconeogenesis|Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) Carbohydrates|Central carbohydrate metabolism|Pyruvate Alanine Serine Interconversions|Serine transporter Carbohydrates|Central carbohydrate metabolism|TCA Cycle|2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Carbohydrates|Central carbohydrate metabolism|TCA Cycle|Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Carbohydrates|Central carbohydrate metabolism|TCA Cycle|Fumarate hydratase class II (EC 4.2.1.2) Carbohydrates|Central carbohydrate metabolism|TCA Cycle|Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Carbohydrates|Central carbohydrate metabolism|TCA Cycle|Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Carbohydrates|Di- and oligosaccharides|Lactose and Galactose Uptake and Utilization|Galactose operon repressor, GalR-LacI family of transcriptional regulators Carbohydrates|Di- and oligosaccharides|Lactose and Galactose Uptake and Utilization|Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Carbohydrates|Di- and oligosaccharides|Lactose and Galactose Uptake and Utilization|Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) Carbohydrates|Di- and oligosaccharides|Maltose and Maltodextrin Utilization|Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) Carbohydrates|Di- and oligosaccharides|Maltose and Maltodextrin Utilization|Maltose operon periplasmic protein MalM Carbohydrates|Di- and oligosaccharides|Maltose and Maltodextrin Utilization|Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) Carbohydrates|Di- and oligosaccharides|Maltose and Maltodextrin Utilization|Periplasmic alpha-amylase (EC 3.2.1.1) Carbohydrates|Di- and oligosaccharides|Maltose and Maltodextrin Utilization|Transcriptional activator of maltose regulon, MalT Carbohydrates|Fermentation|Fermentations: Mixed acid|Sugar/maltose fermentation stimulation protein homolog Carbohydrates|Monosaccharides|D-Galacturonate and D-Glucuronate Utilization|Hexuronate utilization operon transcriptional repressor ExuR Carbohydrates|Monosaccharides|D-Tagatose and Galactitol Utilization|Galactitol utilization operon repressor Carbohydrates|Monosaccharides|D-gluconate and ketogluconates metabolism|Gluconate utilization system Gnt-I transcriptional repressor Carbohydrates|Monosaccharides|D-gluconate and ketogluconates metabolism|Gluconokinase (EC 2.7.1.12) Carbohydrates|Monosaccharides|D-gluconate and ketogluconates metabolism|Low-affinity gluconate/H+ symporter GntU Carbohydrates|Monosaccharides|D-ribose utilization|Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) Carbohydrates|Monosaccharides|D-ribose utilization|Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) Carbohydrates|Monosaccharides|D-ribose utilization|Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) Carbohydrates|Monosaccharides|Deoxyribose and Deoxynucleoside Catabolism|Deoxyribose operon repressor, DeoR family Carbohydrates|Monosaccharides|Fructose utilization|1-phosphofructokinase (EC 2.7.1.56) Carbohydrates|Monosaccharides|Fructose utilization|Fructose repressor FruR, LacI family Carbohydrates|Monosaccharides|Fructose utilization|Phosphotransferase system, phosphocarrier protein HPr Carbohydrates|Monosaccharides|L-ascorbate utilization (and related gene clusters)|3-keto-L-gulonate 6-phosphate decarboxylase Carbohydrates|Monosaccharides|L-ascorbate utilization (and related gene clusters)|Ascorbate utilization transcriptional regulator UlaR, HTH-type Carbohydrates|Monosaccharides|L-ascorbate utilization (and related gene clusters)|Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-) Carbohydrates|Monosaccharides|L-ascorbate utilization (and related gene clusters)|Ascorbate-specific PTS system, EIIC component Carbohydrates|Monosaccharides|L-ascorbate utilization (and related gene clusters)|L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) Carbohydrates|Monosaccharides|L-ascorbate utilization (and related gene clusters)|L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-) Carbohydrates|Monosaccharides|L-ascorbate utilization (and related gene clusters)|Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) Carbohydrates|Monosaccharides|Mannose Metabolism|PTS system, mannose-specific IIC component (EC 2.7.1.69) Carbohydrates|Monosaccharides|Mannose Metabolism|Phosphomannomutase (EC 5.4.2.8) Carbohydrates|Monosaccharides|Xylose utilization|D-xylose transport ATP-binding protein XylG Carbohydrates|Monosaccharides|Xylose utilization|Xylose ABC transporter, periplasmic xylose-binding protein XylF Carbohydrates|Monosaccharides|Xylose utilization|Xylose ABC transporter, permease protein XylH Carbohydrates|Monosaccharides|Xylose utilization|Xylose activator XylR (AraC family) Carbohydrates|Organic acids|Citrate Metabolism, Transport, and Regulation|C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) Carbohydrates|Organic acids|Citrate Metabolism, Transport, and Regulation|Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) Carbohydrates|Organic acids|Lactate utilization|L-lactate dehydrogenase (EC 1.1.2.3) Carbohydrates|Polysaccharides|Glycogen metabolism|Maltodextrin phosphorylase (EC 2.4.1.1) Carbohydrates|Sugar alcohols|Inositol catabolism|Inositol transport system ATP-binding protein Carbohydrates|Sugar alcohols|Inositol catabolism|Inositol transport system permease protein Carbohydrates|Sugar alcohols|Inositol catabolism|Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Carbohydrates|Sugar alcohols|Mannitol Utilization|Mannitol operon repressor Carbohydrates|Sugar alcohols|Mannitol Utilization|Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) Cell Division and Cell Cycle|Cell Division and Cell Cycle - no subcategory|Bacterial Cytoskeleton|Cell division protein ZipA Cell Division and Cell Cycle|Cell Division and Cell Cycle - no subcategory|Bacterial Cytoskeleton|Septum site-determining protein MinC Cell Division and Cell Cycle|Cell Division and Cell Cycle - no subcategory|Bacterial Cytoskeleton|Z-ring-associated protein ZapA Cell Division and Cell Cycle|Cell Division and Cell Cycle - no subcategory|Intracellular septation in Enterobacteria|Acyl-CoA thioesterase YciA, involved in membrane biogenesis Cell Division and Cell Cycle|Cell Division and Cell Cycle - no subcategory|Intracellular septation in Enterobacteria|Intracellular septation protein IspA Cell Division and Cell Cycle|Checkpoint control|Bacterial checkpoint-control-related cluster|Phosphoglucosamine mutase (EC 5.4.2.10) Cell Wall and Capsule|Capsular and extracellular polysacchrides|Rhamnose containing glycans|DNA for glycosyltransferase, lytic transglycosylase, dTDP-4-rhamnose reductase Cell Wall and Capsule|Capsular and extracellular polysacchrides|Sialic Acid Metabolism|N-acetylmannosamine kinase (EC 2.7.1.60) Cell Wall and Capsule|Capsular and extracellular polysacchrides|Sialic Acid Metabolism|N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) Cell Wall and Capsule|Capsular and extracellular polysacchrides|Sialic Acid Metabolism|Putative sugar isomerase involved in processing of exogenous sialic acid Cell Wall and Capsule|Capsular and extracellular polysacchrides|Sialic Acid Metabolism|Sialic acid utilization regulator, RpiR family Cell Wall and Capsule|Capsular and extracellular polysacchrides|Sialic Acid Metabolism|TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|Murein Hydrolases|Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|Murein Hydrolases|Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|Peptidoglycan Biosynthesis|Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|Peptidoglycan Biosynthesis|Murein-DD-endopeptidase (EC 3.4.99.-) Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|Peptidoglycan biosynthesis--gjo|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|Recycling of Peptidoglycan Amino Acids|N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD Cell Wall and Capsule|Cell Wall and Capsule - no subcategory|Recycling of Peptidoglycan Amino Sugars|Beta N-acetyl-glucosaminidase (EC 3.2.1.52) Cell Wall and Capsule|Gram-Negative cell wall components|KDO2-Lipid A biosynthesis|LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) Cell Wall and Capsule|Gram-Negative cell wall components|KDO2-Lipid A biosynthesis|Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) Cell Wall and Capsule|Gram-Negative cell wall components|KDO2-Lipid A biosynthesis|LptA, protein essential for LPS transport across the periplasm Cell Wall and Capsule|Gram-Negative cell wall components|KDO2-Lipid A biosynthesis|UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108) Cell Wall and Capsule|Gram-Negative cell wall components|LOS core oligosaccharide biosynthesis|ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) Cell Wall and Capsule|Gram-Negative cell wall components|LOS core oligosaccharide biosynthesis|O-antigen ligase Cell Wall and Capsule|Gram-Negative cell wall components|LOS core oligosaccharide biosynthesis|Phosphoheptose isomerase (EC 5.3.1.-) Cell Wall and Capsule|Gram-Negative cell wall components|Lipopolysaccharide assembly|Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex Cell Wall and Capsule|Gram-Negative cell wall components|Lipopolysaccharide assembly|Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) Cell Wall and Capsule|Gram-Negative cell wall components|Lipopolysaccharide assembly|Uncharacterized ABC transporter, ATP-binding protein YrbF Cell Wall and Capsule|Gram-Negative cell wall components|Lipopolysaccharide assembly|Uncharacterized ABC transporter, auxiliary component YrbC Cell Wall and Capsule|Gram-Negative cell wall components|Lipopolysaccharide assembly|Uncharacterized ABC transporter, periplasmic component YrbD Cell Wall and Capsule|Gram-Negative cell wall components|Lipopolysaccharide assembly|Uncharacterized ABC transporter, permease component YrbE Cell Wall and Capsule|Gram-Negative cell wall components|Lipopolysaccharide assembly|Uncharacterized protein YrbK clustered with lipopolysaccharide transporters Cell Wall and Capsule|Gram-Negative cell wall components|Lipoprotein sorting system|Outer membrane lipoprotein carrier protein LolA Cofactors, Vitamins, Prosthetic Groups, Pigments|Biotin|Biotin biosynthesis Experimental|NfuA Fe-S protein maturation Cofactors, Vitamins, Prosthetic Groups, Pigments|Coenzyme A|Coenzyme A Biosynthesis|Pantothenate:Na+ symporter (TC 2.A.21.1.1) Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdate-binding domain of ModE Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdenum cofactor biosynthesis protein MoaC Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdenum cofactor biosynthesis protein MoaD Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdenum cofactor biosynthesis protein MoaE Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdopterin biosynthesis molybdochelatase MogA Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdopterin biosynthesis protein MoeA Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdopterin-guanine dinucleotide biosynthesis protein MobA Cofactors, Vitamins, Prosthetic Groups, Pigments|Folate and pterines|Molybdenum cofactor biosynthesis|Molybdopterin-guanine dinucleotide biosynthesis protein MobB Cofactors, Vitamins, Prosthetic Groups, Pigments|Lipoic acid|Lipoic acid metabolism|Proposed lipoate regulatory protein YbeD Cofactors, Vitamins, Prosthetic Groups, Pigments|NAD and NADP|NAD and NADP cofactor biosynthesis global|Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) Cofactors, Vitamins, Prosthetic Groups, Pigments|NAD and NADP|NAD and NADP cofactor biosynthesis global|Ribosyl nicotinamide transporter, PnuC-like Cofactors, Vitamins, Prosthetic Groups, Pigments|Quinone cofactors|Menaquinone and Phylloquinone Biosynthesis -- gjo|2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Cofactors, Vitamins, Prosthetic Groups, Pigments|Quinone cofactors|Menaquinone and Phylloquinone Biosynthesis -- gjo|Menaquinone-specific isochorismate synthase (EC 5.4.4.2) Cofactors, Vitamins, Prosthetic Groups, Pigments|Quinone cofactors|Ubiquinone Biosynthesis|Chorismate--pyruvate lyase (EC 4.1.3.40) Cofactors, Vitamins, Prosthetic Groups, Pigments|Riboflavin, FMN, FAD|Flavodoxin|Flavoprotein MioC Cofactors, Vitamins, Prosthetic Groups, Pigments|Riboflavin, FMN, FAD|Riboflavin, FMN and FAD metabolism|3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) Cofactors, Vitamins, Prosthetic Groups, Pigments|Riboflavin, FMN, FAD|Riboflavin, FMN and FAD metabolism|GTP cyclohydrolase II (EC 3.5.4.25) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Heme and Siroheme Biosynthesis|Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Heme and Siroheme Biosynthesis|Glutamyl-tRNA reductase (EC 1.2.1.70) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Heme and Siroheme Biosynthesis|Porphobilinogen deaminase (EC 2.5.1.61) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Heme and Siroheme Biosynthesis|Porphobilinogen synthase (EC 4.2.1.24) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Heme and Siroheme Biosynthesis|Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Heme and Siroheme Biosynthesis|Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Heme and Siroheme Biosynthesis|Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Heme and Siroheme Biosynthesis|Uroporphyrinogen-III synthase (EC 4.2.1.75) DNA Metabolism|DNA Metabolism - no subcategory|DNA ligases|DNA ligase (ATP) (EC 6.5.1.1) DNA Metabolism|DNA Metabolism - no subcategory|DNA structural proteins, bacterial|Chromosome partition protein MukB DNA Metabolism|DNA Metabolism - no subcategory|DNA structural proteins, bacterial|Chromosome partition protein MukE DNA Metabolism|DNA Metabolism - no subcategory|DNA structural proteins, bacterial|Chromosome partition protein MukF DNA Metabolism|DNA Metabolism - no subcategory|DNA structural proteins, bacterial|DNA-binding protein Fis DNA Metabolism|DNA Metabolism - no subcategory|DNA structural proteins, bacterial|DNA-binding protein HU-alpha DNA Metabolism|DNA Metabolism - no subcategory|DNA structural proteins, bacterial|Integration host factor beta subunit DNA Metabolism|DNA repair|2-phosphoglycolate salvage|Putative phosphatase YqaB DNA Metabolism|DNA repair|DNA Repair Base Excision|Exodeoxyribonuclease I (EC 3.1.11.1) DNA Metabolism|DNA repair|DNA repair, bacterial RecBCD pathway|Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) DNA Metabolism|DNA repair|DNA repair, bacterial RecBCD pathway|Exodeoxyribonuclease V beta chain (EC 3.1.11.5) DNA Metabolism|DNA repair|DNA repair, bacterial RecBCD pathway|Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) DNA Metabolism|DNA repair|DNA repair, bacterial|DNA mismatch repair endonuclease MutH DNA Metabolism|DNA repair|DNA repair, bacterial|DNA recombination-dependent growth factor C DNA Metabolism|DNA replication|DNA topoisomerases, Type I, ATP-independent|Similar to C-terminal Zn-finger domain of DNA topoisomerase I Dormancy and Sporulation|Dormancy and Sporulation - no subcategory|Persister Cells|HipB protein Fatty Acids, Lipids, and Isoprenoids|Fatty Acids, Lipids, and Isoprenoids - no subcategory|Polyhydroxybutyrate metabolism|D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Fatty Acid Biosynthesis FASII|3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59) Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Fatty Acid Biosynthesis FASII|4@1-phosphopantetheinyl transferase (EC 2.7.8.-) Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|3-oxoacyl-[ACP] reductase (EC 1.1.1.100) Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|3-oxoacyl-[ACP] synthase Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|Acyl carrier protein (ACP2) Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|FIG017861: hypothetical protein Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|FIG021862: membrane protein, exporter Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|FIG027190: Putative transmembrane protein Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|FIG085779: Lipoprotein Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|FIG143263: Glycosyl transferase Fatty Acids, Lipids, and Isoprenoids|Fatty acids|Phospholipid and Fatty acid biosynthesis related cluster|FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase Fatty Acids, Lipids, and Isoprenoids|Phospholipids|Glycerolipid and Glycerophospholipid Metabolism in Bacteria|Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY Fatty Acids, Lipids, and Isoprenoids|Phospholipids|Glycerolipid and Glycerophospholipid Metabolism in Bacteria|Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) Fatty Acids, Lipids, and Isoprenoids|Phospholipids|Glycerolipid and Glycerophospholipid Metabolism in Bacteria|Phosphate:acyl-ACP acyltransferase PlsX Iron acquisition and metabolism|Iron acquisition and metabolism - no subcategory|Iron acquisition in Streptococcus|Ferric iron ABC transporter, ATP-binding protein Iron acquisition and metabolism|Iron transpot|Iron transport system including ABC transporter|Possible periplasmic thiredoxin Membrane Transport|ABC transporters|ABC transporter of unknown substrate X|Possible ABC transporter, periplasmic substrate X binding protein precursor Membrane Transport|ABC transporters|ABC transporter of unknown substrate X|Putative ABC transporter of substrate X, ATP-binding subunit Membrane Transport|ABC transporters|ABC transporter of unknown substrate X|Putative ABC transporter of substrate X, permease subunit I Membrane Transport|ABC transporters|ABC transporter of unknown substrate X|Putative ABC transporter of substrate X, permease subunit II Membrane Transport|ABC transporters|Peptide ABC transport system Sap|Peptide transport system ATP-binding protein SapD Membrane Transport|ABC transporters|Peptide ABC transport system Sap|Peptide transport system ATP-binding protein SapF Membrane Transport|ABC transporters|Peptide ABC transport system Sap|Peptide transport system permease protein SapB Membrane Transport|ABC transporters|Peptide ABC transport system Sap|Peptide transport system permease protein SapC Membrane Transport|Cation transporters|Copper Transport System|Copper-translocating P-type ATPase (EC 3.6.3.4) Membrane Transport|Cation transporters|Transport of Nickel and Cobalt|Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) Membrane Transport|Membrane Transport - no subcategory|Phosphoglycerate transport system|Phosphoglycerate transport regulatory protein PgtC Membrane Transport|Membrane Transport - no subcategory|Phosphoglycerate transport system|Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) Membrane Transport|Membrane Transport - no subcategory|Phosphoglycerate transport system|Phosphoglycerate transport system transcriptional regulatory protein PgtA Membrane Transport|Membrane Transport - no subcategory|Ton and Tol transport systems|Tol biopolymer transport system, TolR protein Membrane Transport|Protein and nucleoprotein secretion system, Type IV|Type IV pilus|Type IV fimbrial assembly, ATPase PilB Membrane Transport|Protein and nucleoprotein secretion system, Type IV|Type IV pilus|Type IV pilin PilA Membrane Transport|Protein secretion system, Type II|Widespread colonization island|Flp pilus assembly protein RcpC/CpaB Membrane Transport|Protein secretion system, Type II|Widespread colonization island|Flp pilus assembly protein TadB Membrane Transport|Protein secretion system, Type II|Widespread colonization island|Flp pilus assembly protein TadD, contains TPR repeat Membrane Transport|Protein secretion system, Type II|Widespread colonization island|Protein TadG, associated with Flp pilus assembly Membrane Transport|Protein secretion system, Type II|Widespread colonization island|Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily Membrane Transport|Protein secretion system, Type II|Widespread colonization island|Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly Membrane Transport|Protein secretion system, Type II|Widespread colonization island|Type II/IV secretion system protein TadC, associated with Flp pilus assembly Membrane Transport|Protein secretion system, Type II|Widespread colonization island|Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly Membrane Transport|Protein secretion system, Type II|Widespread colonization island|Type IV prepilin peptidase TadV/CpaA Membrane Transport|Protein translocation across cytoplasmic membrane|Twin-arginine translocation system|Twin-arginine translocation protein TatB Miscellaneous|Miscellaneous - no subcategory|Broadly distributed proteins not in subsystems|FIG001943: hypothetical protein YajQ Miscellaneous|Miscellaneous - no subcategory|Broadly distributed proteins not in subsystems|FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster Miscellaneous|Miscellaneous - no subcategory|Broadly distributed proteins not in subsystems|UPF0225 protein YchJ Miscellaneous|Miscellaneous - no subcategory|Broadly distributed proteins not in subsystems|UPF0265 protein YeeX Miscellaneous|Miscellaneous - no subcategory|Broadly distributed proteins not in subsystems|YciL protein Miscellaneous|Miscellaneous - no subcategory|Broadly distributed proteins not in subsystems|YpfJ protein, zinc metalloprotease superfamily Miscellaneous|Miscellaneous - no subcategory|Broadly distributed proteins not in subsystems|YrbA protein Miscellaneous|Plant-Prokaryote DOE project|Scaffold proteins for [4Fe-4S] cluster assembly (MRP family)|Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like Miscellaneous|Plant-Prokaryote DOE project|Single-Rhodanese-domain proteins|Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) Miscellaneous|Plant-Prokaryote DOE project|YrdC-YciO-Sua5 protein family|Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Ammonia assimilation|Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Ammonia assimilation|[Protein-PII] uridylyltransferase (EC 2.7.7.59) Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Cytochrome c-type protein NapC Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Cytochrome c-type protein NrfB precursor Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Ferredoxin-type protein NapF (periplasmic nitrate reductase) Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Nitrate reductase cytochrome c550-type subunit Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Nitrate/nitrite response regulator protein Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Nitrate/nitrite sensor protein (EC 2.7.3.-) Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|NrfC protein Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|NrfD protein Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Periplasmic nitrate reductase precursor (EC 1.7.99.4) Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Polyferredoxin NapH (periplasmic nitrate reductase) Nitrogen Metabolism|Nitrogen Metabolism - no subcategory|Nitrate and nitrite ammonification|Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly Nucleosides and Nucleotides|Detoxification|Housecleaning nucleoside triphosphate pyrophosphatases|Nucleotidase YfbR, HD superfamily Nucleosides and Nucleotides|Detoxification|Nudix proteins (nucleoside triphosphate hydrolases)|ADP compounds hydrolase NudE (EC 3.6.1.-) Nucleosides and Nucleotides|Detoxification|Nudix proteins (nucleoside triphosphate hydrolases)|Adenosine (5@1)-pentaphospho-(5@1@1)-adenosine pyrophosphohydrolase (EC 3.6.1.-) Nucleosides and Nucleotides|Purines|Purine Utilization|Guanine-hypoxanthine permease Nucleosides and Nucleotides|Purines|Purine conversions|Nucleoside diphosphate kinase (EC 2.7.4.6) Nucleosides and Nucleotides|Purines|Purine conversions|Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) Nucleosides and Nucleotides|Purines|Purine nucleotide synthesis regulator|Purine nucleotide synthesis repressor Nucleosides and Nucleotides|Pyrimidines|De Novo Pyrimidine Synthesis|Dihydroorotate dehydrogenase (EC 1.3.3.1) Nucleosides and Nucleotides|Pyrimidines|pyrimidine conversions|Bis(5@1-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) Nucleosides and Nucleotides|Pyrimidines|pyrimidine conversions|Deoxycytidine triphosphate deaminase (EC 3.5.4.13) Nucleosides and Nucleotides|Pyrimidines|pyrimidine conversions|Uridine kinase (EC 2.7.1.48) [C1] Nucleosides and Nucleotides|Pyrimidines|pyrimidine conversions|Uridine phosphorylase (EC 2.4.2.3) Potassium metabolism|Potassium metabolism - no subcategory|Potassium homeostasis|Glutathione-regulated potassium-efflux system ATP-binding protein Protein Metabolism|Protein biosynthesis|Glycyl-tRNA synthetase|Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) Protein Metabolism|Protein biosynthesis|Glycyl-tRNA synthetase|Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) Protein Metabolism|Protein biosynthesis|Ribosome activity modulation|Ribosome hibernation protein YfiA Protein Metabolism|Protein biosynthesis|Ribosome biogenesis bacterial|Ribonuclease E (EC 3.1.26.12) Protein Metabolism|Protein biosynthesis|Ribosome biogenesis bacterial|Ribosomal protein S6 glutaminyl transferase Protein Metabolism|Protein biosynthesis|Ribosome biogenesis bacterial|Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Protein Metabolism|Protein degradation|Aminopeptidases (EC 3.4.11.-)|Membrane alanine aminopeptidase N (EC 3.4.11.2) Protein Metabolism|Protein degradation|Aminopeptidases (EC 3.4.11.-)|Peptidase B (EC 3.4.11.23) Protein Metabolism|Protein degradation|Protein degradation|Oligopeptidase A (EC 3.4.24.70) Protein Metabolism|Protein degradation|Putative TldE-TldD proteolytic complex|FIG138315: Putative alpha helix protein Protein Metabolism|Protein folding|Peptidyl-prolyl cis-trans isomerase|Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) Protein Metabolism|Protein folding|Peptidyl-prolyl cis-trans isomerase|Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) Protein Metabolism|Protein folding|Periplasmic disulfide interchange|Thiol:disulfide interchange protein DsbC Protein Metabolism|Protein folding|Protein chaperones|Chaperone protein HscB Protein Metabolism|Protein processing and modification|Peptide methionine sulfoxide reductase|Cytochrome c-type biogenesis protein CcdA homolog, associated with MetSO reductase Protein Metabolism|Protein processing and modification|Peptide methionine sulfoxide reductase|Thiol:disulfide oxidoreductase associated with MetSO reductase Protein Metabolism|Protein processing and modification|Protein deglycation|Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation RNA Metabolism|RNA processing and modification|RNA methylation|23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) RNA Metabolism|RNA processing and modification|RNA methylation|23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) RNA Metabolism|RNA processing and modification|RNA methylation|Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) RNA Metabolism|RNA processing and modification|RNA methylation|tRNA (cytidine(34)-2@1-O)-methyltransferase (EC 2.1.1.207) RNA Metabolism|RNA processing and modification|RNA processing and degradation, bacterial|3@1-to-5@1 oligoribonuclease (orn) RNA Metabolism|RNA processing and modification|RNA processing and degradation, bacterial|Exoribonuclease II (EC 3.1.13.1) RNA Metabolism|RNA processing and modification|RNA processing and degradation, bacterial|Ribonuclease E inhibitor RraA RNA Metabolism|RNA processing and modification|RNA processing and degradation, bacterial|Ribonuclease E inhibitor RraB RNA Metabolism|RNA processing and modification|mnm5U34 biosynthesis bacteria|tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) RNA Metabolism|RNA processing and modification|mnm5U34 biosynthesis bacteria|tRNA 5-methylaminomethyl-2-thiouridine synthase TusA RNA Metabolism|RNA processing and modification|tRNA modification Bacteria|Believed to be involved in assembly of Fe-S clusters RNA Metabolism|RNA processing and modification|tRNA modification Bacteria|COG1720: Uncharacterized conserved protein RNA Metabolism|RNA processing and modification|tRNA modification Bacteria|Predicted P-loop ATPase fused to an acetyltransferase COG1444 RNA Metabolism|RNA processing and modification|tRNA modification Bacteria|hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] RNA Metabolism|RNA processing and modification|tRNA modification Bacteria|tRNA (5-methoxyuridine) 34 synthase RNA Metabolism|RNA processing and modification|tRNA modification Bacteria|tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase RNA Metabolism|RNA processing and modification|tRNA modification Bacteria|tRNA pseudouridine synthase C (EC 4.2.1.70) RNA Metabolism|RNA processing and modification|tRNA processing|Ribonuclease D (EC 3.1.26.3) RNA Metabolism|RNA processing and modification|tRNA processing|Ribonuclease T (EC 3.1.13.-) RNA Metabolism|RNA processing and modification|tRNA processing|tRNA pseudouridine 13 synthase (EC 4.2.1.-) RNA Metabolism|Transcription|RNA polymerase bacterial|DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) RNA Metabolism|Transcription|Transcription factors bacterial|Transcription elongation factor GreB RNA Metabolism|Transcription|Transcription initiation, bacterial sigma factors|Sigma factor RpoE regulatory protein RseC Regulation and Cell signaling|Programmed Cell Death and Toxin-antitoxin Systems|Murein hydrolase regulation and cell death|LysR family regulatory protein CidR Regulation and Cell signaling|Programmed Cell Death and Toxin-antitoxin Systems|Murein hydrolase regulation and cell death|tRNA-dihydrouridine synthase C (EC 1.-.-.-) Regulation and Cell signaling|Quorum sensing and biofilm formation|Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)|Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component Regulation and Cell signaling|Quorum sensing and biofilm formation|Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)|Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC Regulation and Cell signaling|Quorum sensing and biofilm formation|Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)|Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD Regulation and Cell signaling|Quorum sensing and biofilm formation|Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)|Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB Regulation and Cell signaling|Quorum sensing and biofilm formation|Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)|Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-) Regulation and Cell signaling|Quorum sensing and biofilm formation|Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)|Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-) Regulation and Cell signaling|Quorum sensing and biofilm formation|Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)|Autoinducer 2 (AI-2) modifying protein LsrG Regulation and Cell signaling|Quorum sensing and biofilm formation|Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)|LsrR, transcriptional repressor of lsr operon Regulation and Cell signaling|Quorum sensing and biofilm formation|Biofilm Adhesin Biosynthesis|Biofilm PGA outer membrane secretin PgaA Regulation and Cell signaling|Quorum sensing and biofilm formation|Biofilm Adhesin Biosynthesis|Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) Regulation and Cell signaling|Quorum sensing and biofilm formation|Biofilm Adhesin Biosynthesis|Biofilm PGA synthesis deacetylase PgaB (EC 3.-) Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|Orphan regulatory proteins|Copper sensory histidine kinase CpxA Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|Orphan regulatory proteins|Copper-sensing two-component system response regulator CpxR Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|Orphan regulatory proteins|DNA transformation protein TfoX Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|Orphan regulatory proteins|Glycine cleavage system transcriptional activator GcvA Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|Orphan regulatory proteins|Sensory histidine kinase QseC Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|Orphan regulatory proteins|Two-component system response regulator QseB Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|cAMP signaling in bacteria|3@1,5@1-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|cAMP signaling in bacteria|Cyclic AMP receptor protein Regulation and Cell signaling|Regulation and Cell signaling - no subcategory|cAMP signaling in bacteria|bifunctional hemolysin-adenylate cyclase precursor Regulation and Cell signaling|Regulation of virulence|A conserved operon linked to TyrR and possibly involved in virulence|Conserved protein YcjX with nucleoside triphosphate hydrolase domain Regulation and Cell signaling|Regulation of virulence|A conserved operon linked to TyrR and possibly involved in virulence|Membrane protein YcjF Respiration|ATP synthases|F0F1-type ATP synthase|ATP synthase F0 sector subunit c (EC 3.6.3.14) Respiration|Electron donating reactions|Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes|Probable exported or periplasmic protein in ApbE locus Respiration|Electron donating reactions|NiFe hydrogenase maturation|[NiFe] hydrogenase metallocenter assembly protein HybG Respiration|Electron donating reactions|NiFe hydrogenase maturation|[NiFe] hydrogenase metallocenter assembly protein HypD Respiration|Electron donating reactions|NiFe hydrogenase maturation|[NiFe] hydrogenase metallocenter assembly protein HypE Respiration|Electron donating reactions|NiFe hydrogenase maturation|[NiFe] hydrogenase metallocenter assembly protein HypF Respiration|Electron donating reactions|NiFe hydrogenase maturation|[NiFe] hydrogenase nickel incorporation protein HybF Respiration|Electron donating reactions|Succinate dehydrogenase|Fumarate reductase subunit C Respiration|Electron donating reactions|Succinate dehydrogenase|Fumarate reductase subunit D Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|ABC transporter involved in cytochrome c biogenesis, CcmB subunit Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Cytochrome c heme lyase subunit CcmF Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Cytochrome c heme lyase subunit CcmH Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Cytochrome c heme lyase subunit CcmL Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Cytochrome c-type biogenesis protein CcmE, heme chaperone Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Periplasmic thiol:disulfide interchange protein DsbA Respiration|Respiration - no subcategory|Biogenesis of c-type cytochromes|Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation Respiration|Respiration - no subcategory|Biogenesis of cytochrome c oxidases|Copper metallochaperone, bacterial analog of Cox17 protein Respiration|Respiration - no subcategory|Biogenesis of cytochrome c oxidases|Ferredoxin--NADP(+) reductase (EC 1.18.1.2) Respiration|Respiration - no subcategory|Biogenesis of cytochrome c oxidases|Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly Respiration|Respiration - no subcategory|Formate hydrogenase|Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) Respiration|Respiration - no subcategory|Formate hydrogenase|Formate dehydrogenase O beta subunit (EC 1.2.1.2) Respiration|Respiration - no subcategory|Formate hydrogenase|Formate dehydrogenase chain D (EC 1.2.1.2) Respiration|Respiration - no subcategory|Formate hydrogenase|Formate hydrogenlyase subunit 5 Respiration|Respiration - no subcategory|Formate hydrogenase|Formate hydrogenlyase subunit 7 Respiration|Respiration - no subcategory|Formate hydrogenase|Formate hydrogenlyase transcriptional activator Respiration|Respiration - no subcategory|Formate hydrogenase|formate dehydrogenase formation protein FdhE Respiration|Respiration - no subcategory|Soluble cytochromes and functionally related electron carriers|Cytochrome C553 (soluble cytochrome f) Stress Response|Cold shock|Cold shock, CspA family of proteins|Cold shock protein CspD Stress Response|Detoxification|Glutathione-dependent pathway of formaldehyde detoxification|S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) Stress Response|Detoxification|Glutathione-dependent pathway of formaldehyde detoxification|S-formylglutathione hydrolase (EC 3.1.2.12) Stress Response|Detoxification|Tellurite resistance: Chromosomal determinants|Tellurite resistance protein TehB Stress Response|Heat shock|Heat shock dnaK gene cluster extended|FIG001341: Probable Fe(2+)-trafficking protein YggX Stress Response|Heat shock|Heat shock dnaK gene cluster extended|Glutathione synthetase (EC 6.3.2.3) Stress Response|Heat shock|Heat shock dnaK gene cluster extended|RNA polymerase sigma factor RpoH Stress Response|Heat shock|Heat shock dnaK gene cluster extended|Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB Stress Response|Heat shock|Heat shock dnaK gene cluster extended|Ribonuclease PH (EC 2.7.7.56) Stress Response|Osmotic stress|Choline and Betaine Uptake and Betaine Biosynthesis|L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Stress Response|Osmotic stress|Osmoregulation|Outer membrane protein A precursor Stress Response|Osmotic stress|Osmotic stress cluster|Heat shock (predicted periplasmic) protein YciM, precursor Stress Response|Osmotic stress|Osmotic stress cluster|Osmotically inducible lipoprotein B precursor Stress Response|Osmotic stress|Osmotic stress cluster|Phosphatidylglycerophosphatase B (EC 3.1.3.27) Stress Response|Oxidative stress|Cluster containing Glutathione synthetase|UPF0301 protein YqgE Stress Response|Oxidative stress|Glutaredoxins|Glutaredoxin 1 Stress Response|Oxidative stress|Glutaredoxins|Glutaredoxin 2 Stress Response|Oxidative stress|Glutaredoxins|Glutaredoxin-related protein Stress Response|Oxidative stress|Glutathione: Biosynthesis and gamma-glutamyl cycle|Gamma-glutamyltranspeptidase (EC 2.3.2.2) Stress Response|Oxidative stress|Glutathione: Biosynthesis and gamma-glutamyl cycle|Glutathione biosynthesis bifunctional protein gshF (EC 6.3.2.2)(EC 6.3.2.3) Stress Response|Oxidative stress|Glutathione: Non-redox reactions|FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) Stress Response|Oxidative stress|Glutathione: Non-redox reactions|Glutathione S-transferase (EC 2.5.1.18) Stress Response|Oxidative stress|Glutathione: Redox cycle|Glutathione reductase (EC 1.8.1.7) Stress Response|Oxidative stress|NADPH:quinone oxidoreductase 2|NADPH:quinone oxidoreductase 2 Stress Response|Oxidative stress|NADPH:quinone oxidoreductase 2|Redox-sensing transcriptional regulator QorR Stress Response|Oxidative stress|Oxidative stress|Catalase (EC 1.11.1.6) Stress Response|Oxidative stress|Oxidative stress|Fumarate and nitrate reduction regulatory protein Stress Response|Oxidative stress|Oxidative stress|Paraquat-inducible protein A Stress Response|Oxidative stress|Oxidative stress|Paraquat-inducible protein B Stress Response|Oxidative stress|Oxidative stress|Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) Stress Response|Oxidative stress|Protection from Reactive Oxygen Species|Cytochrome c551 peroxidase (EC 1.11.1.5) Stress Response|Periplasmic Stress|Periplasmic Stress Response|Outer membrane stress sensor protease DegQ, serine protease Stress Response|Periplasmic Stress|Periplasmic Stress Response|Sigma factor RpoE negative regulatory protein RseA Stress Response|Periplasmic Stress|Periplasmic Stress Response|Sigma factor RpoE negative regulatory protein RseB precursor Stress Response|Stress Response - no subcategory|Carbon Starvation|Starvation lipoprotein Slp paralog Stress Response|Stress Response - no subcategory|Carbon Starvation|Stringent starvation protein A Stress Response|Stress Response - no subcategory|Carbon Starvation|Stringent starvation protein B Stress Response|Stress Response - no subcategory|Hfl operon|RNA-binding protein Hfq Stress Response|Stress Response - no subcategory|Universal stress protein family|Universal stress protein A Stress Response|Stress Response - no subcategory|Universal stress protein family|Universal stress protein E Sulfur Metabolism|Inorganic sulfur assimilation|Sulfite reduction-associated complex DsrMKJOP and co-clustering genes|tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-) Sulfur Metabolism|Inorganic sulfur assimilation|Sulfite reduction-associated complex DsrMKJOP and co-clustering genes|tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Sulfur Metabolism|Inorganic sulfur assimilation|Sulfite reduction-associated complex DsrMKJOP and co-clustering genes|tRNA 5-methylaminomethyl-2-thiouridine synthase TusC Sulfur Metabolism|Inorganic sulfur assimilation|Sulfite reduction-associated complex DsrMKJOP and co-clustering genes|tRNA 5-methylaminomethyl-2-thiouridine synthase TusD Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Copper homeostasis|Copper chaperone Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Copper homeostasis|Cu(I)-responsive transcriptional regulator Virulence, Disease and Defense|Toxins and superantigens|Cytolethal distending toxin of Campylobacter jejuni|Cytolethal distending toxin subunit B PG Amino Acids and Derivatives|Arginine; urea cycle, polyamines|Arginine and Ornithine Degradation|Ornithine aminotransferase (EC 2.6.1.13) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Lysine degradation|L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Lysine degradation|L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Lysine fermentation|3,5-diaminohexanoate dehydrogenase (EC 1.4.1.11) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Lysine fermentation|3-aminobutyryl-CoA ammonia-lyase (EC 4.3.1.14) Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Lysine fermentation|3-keto-5-aminohexanoate cleavage enzyme Amino Acids and Derivatives|Proline and 4-hydroxyproline|Proline, 4-hydroxyproline uptake and utilization|Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) Carbohydrates|Central carbohydrate metabolism|TCA Cycle|Fumarate hydratase class I (EC 4.2.1.2) Carbohydrates|Fermentation|Acetyl-CoA fermentation to Butyrate|3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) Carbohydrates|Fermentation|Acetyl-CoA fermentation to Butyrate|Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) Carbohydrates|Fermentation|Acetyl-CoA fermentation to Butyrate|Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) Carbohydrates|Fermentation|Acetyl-CoA fermentation to Butyrate|Butyryl-CoA dehydrogenase (EC 1.3.8.1) Cofactors, Vitamins, Prosthetic Groups, Pigments|Cofactors, Vitamins, Prosthetic Groups, Pigments - no subcategory|Thiamin biosynthesis|Thiamin biosynthesis protein ThiC Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Coenzyme B12 biosynthesis|Adenosylcobinamide amidohydrolase (EC 3.5.1.90) Cofactors, Vitamins, Prosthetic Groups, Pigments|Tetrapyrroles|Heme and Siroheme Biosynthesis|Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4) DNA Metabolism|DNA repair|DNA repair, bacterial MutL-MutS system|MutS domain protein, family 2 Nucleosides and Nucleotides|Detoxification|Housecleaning nucleoside triphosphate pyrophosphatases|5@1-nucleotidase YjjG (EC 3.1.3.5) Nucleosides and Nucleotides|Nucleosides and Nucleotides - no subcategory|dNTP triphosphohydrolase protein family|dNTP triphosphohydrolase, broad substrate specificity, subgroup 3 Nucleosides and Nucleotides|Purines|Purine Utilization|Xanthine permease Nucleosides and Nucleotides|Purines|Purine conversions|Xanthine phosphoribosyltransferase (EC 2.4.2.22) Protein Metabolism|Selenoproteins|Selenocysteine metabolism|Selenophosphate-dependent tRNA 2-selenouridine synthase RNA Metabolism|RNA processing and modification|Queuosine-Archaeosine Biosynthesis|Epoxyqueuosine (oQ) reductase QueG Stress Response|Oxidative stress|Redox-dependent regulation of nucleus processes|Nicotinamidase (EC 3.5.1.19) Stress Response|Stress Response - no subcategory|Dimethylarginine metabolism|NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18) Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Resistance to Vancomycin|Vancomycin B-type resistance protein VanW TF Amino Acids and Derivatives|Lysine, threonine, methionine, and cysteine|Methionine Degradation|Adenosylhomocysteinase (EC 3.3.1.1) Carbohydrates|Aminosugars|Chitin and N-acetylglucosamine utilization|Chitin binding protein Carbohydrates|Di- and oligosaccharides|Maltose and Maltodextrin Utilization|Sugar phosphate isomerases/epimerases family protein YcjR Carbohydrates|Monosaccharides|D-Galacturonate and D-Glucuronate Utilization|Polygalacturonase (EC 3.2.1.15) Cell Wall and Capsule|Gram-Negative cell wall components|KDO2-Lipid A biosynthesis|Oligosaccharide repeat unit polymerase Wzy Cell Wall and Capsule|Gram-Positive cell wall components|Polyglycerolphosphate lipoteichoic acid biosynthesis|Lipoteichoic acid synthase LtaS Type IVb Cofactors, Vitamins, Prosthetic Groups, Pigments|Riboflavin, FMN, FAD|Riboflavin, FMN and FAD metabolism|FMN adenylyltransferase, type 3 archaeal (EC 2.7.7.2) DNA Metabolism|CRISPs|CRISPR-associated cluster|CRISPR repeat RNA endoribonuclease Cas6 DNA Metabolism|CRISPs|CRISPR-associated cluster|CRISPR-associated RAMP Csm3 DNA Metabolism|CRISPs|CRISPR-associated cluster|CRISPR-associated RAMP protein, Csm4 family DNA Metabolism|CRISPs|CRISPR-associated cluster|CRISPR-associated protein, Csm1 family DNA Metabolism|CRISPs|CRISPR-associated cluster|CRISPR-associated protein, Csm2 family DNA Metabolism|CRISPs|CRISPR-associated cluster|CRISPR-associated protein, Csm5 family DNA Metabolism|CRISPs|CRISPR-associated cluster|DUF324 domain-containing protein Dormancy and Sporulation|Dormancy and Sporulation - no subcategory|Spore Core Dehydration|Fused spore maturation proteins A and B Protein Metabolism|Protein biosynthesis|Ribosome LSU bacterial|LSU ribosomal protein L31p Protein Metabolism|Protein biosynthesis|Ribosome SSU bacterial|SSU ribosomal protein S18p Protein Metabolism|Protein biosynthesis|Ribosome biogenesis bacterial|Ribosomal-protein-L7p-serine acetyltransferase Protein Metabolism|Protein biosynthesis|tRNA aminoacylation, Ala|Alanyl-tRNA synthetase domain protein Protein Metabolism|Protein biosynthesis|tRNAs|tRNA-Ser-CGA RNA Metabolism|Transcription|Transcription factors bacterial|Transcriptional activator RfaH RNA Metabolism|Transcription|Transcription initiation, bacterial sigma factors|RNA polymerase sigma factor SigW Secondary Metabolism|Secondary Metabolism - no subcategory|Lanthionine Synthetases|Lanthionine biosynthesis cyclase LanC Secondary Metabolism|Secondary Metabolism - no subcategory|Lanthionine Synthetases|Lanthionine biosynthesis protein LanB Stress Response|Oxidative stress|Oxidative stress|transcriptional regulator, Fur family Virulence, Disease and Defense|Bacteriocins, ribosomally synthesized antibacterial peptides|Tolerance to colicin E2|Inner membrane protein CreD-like protein Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Cobalt-zinc-cadmium resistance|Heavy metal RND efflux outer membrane protein, CzcC family Virulence, Disease and Defense|Resistance to antibiotics and toxic compounds|Multidrug Resistance Efflux Pumps|Acriflavin resistance protein