##### HOMD Genomic Reference Sequences, Version 9.0 ##### Updated date: 2019-08-16 ##### Genomes Annotated with PROKKA 1.12 by Torsten Seemann ##### https://github.com/tseemann/prokka ##### ##### Genomic data are provided with with the SEQF IDs as the file names, see SEQFID_info.txt (or SEQFID_info.csv) for meta information ##### ##### Annotations are provided with the following files provided by PROKKA: ##### ##### 1. faa: proteins in fasta sequence format ##### 2. ffn: protein-encoding genes (DNA sequences) in fasta format ##### 3. fna: genomic sequences (complete or contigs) in fasta format - input DNA sequences for PROKKA ##### 4. fsa: same as 3. but generated by PROKKA with organism name ##### 5. gbk: PROKKA annotation result in GenBank format ##### 6. gff: PROKKA annotation result in Genomic File Format (gff version 3) ##### 7. tsv: tab-delemited annotation result genereated by PROKKA ##### 8. summary: annotaton summary provided by PROKKA .txt file ##### ##### The above files are provided as individual genomes (with SEQF IDs) in the corresponding folders ##### , as well as all genomes in a single file all_genomes.XXX, where XXX is the respective file extention ##### ##### If you have any queston please contact George Chen by email tchen@forsyth.org