##### HOMD Genomic Reference Sequences, Version 11.0, Original NCBI sequences
##### Updated date: 2025-03-06
##### 
##### Genomic data are provided with with the GCA IDs as the file names, see GCA_ID_info.txt (or GCA_ID_info.csv) for meta information
#####
##### Sequences are provided with the following files from the original NCBI protein.faa, cds_from_genomic.fna, and genomic_fna files:
#####
##### 1. faa: proteins in fasta sequence format
##### 2. ffn: protein-encoding genes (DNA sequences) in fasta format
##### 3. fna: genomic sequences (complete or contigs) in fasta format
##### 4. gff: genome annotation in gff format
#####
##### The above files are provided as individual genomes (with GCA IDs) in the corresponding folders,
##### as well as all genomes in a single file all_genomes.XXX, where XXX is the respective file extention
##### 
##### If a file is missing, it means NCBI did not providate that file. All genomes should have at least the genomic_fna.gz file;
##### All the missing files are recorded in the file "missing_files.txt";
##### If you have any queston please contact George Chen by email tchen@forsyth.org