Oct  6 17:29:44
Will run velvet optimiser with the following paramters:
	Velveth parameter string:
		-shortPaired -fastq -separate SRR413299_1.fastq SRR413299_2.fastq
	Velveth start hash values:	19
	Velveth end hash value:		31
	Velveth hash step value:	2
	Velvetg minimum coverage cutoff to use:	0

	Read tracking for final assembly off.
Oct  6 17:29:44

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		Optimum value of cutoff is 107.44
		Took 13 iterations
Oct  6 18:46:51


Final optimised assembly details:
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Assembly id: 7
Assembly score: 2194048
Velveth timestamp: Oct  6 2015 17:37:36
Velvetg timestamp: Oct  6 2015 18:46:51
Velveth version: 1.2.09
Velvetg version: 1.2.09
Readfile(s): -shortPaired -fastq -separate SRR413299_1.fastq SRR413299_2.fastq
Velveth parameter string: auto_data_31 31 -shortPaired -fastq -separate SRR413299_1.fastq SRR413299_2.fastq
Velvetg parameter string: auto_data_31  -clean yes -exp_cov 252 -cov_cutoff 107.197160276609
Assembly directory: /mnt/bioinfohd1/tsute/collaboration/Margaret_Duncan/2013_W50_Seq/velvetoptimizer/auto_data_31
Velvet hash value: 31
Roadmap file size: 551169575
Total number of contigs: 365
n50: 35560
length of longest contig: 141995
Total bases in contigs: 2227915
Number of contigs > 1k: 106
Total bases in contigs > 1k: 2194048
Paired Library insert stats:
Paired-end library 1 has length: 254, sample standard deviation: 76
Paired-end library 1 has length: 254, sample standard deviation: 76
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