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16S rRNA Refseq V15.2 Genomic RefSeq V9.03

HOMD Genomes

Navigate genomes by Phylum:

Navigate genomes by alphabet:
A|B|C|D|E|F|G|H|I|J|K|L|M|N|O|P|Q|R|S|T|U|V|W|X|Y|Z|All Entries: 1558 genomes

genomes: Options [+]
In: Matching
	Sequencing Status: All Complete High Coverage Survey
	Annotation: All HOMD with StaticHOMD onlyStatic onlyNon-oral/nasal

No. of genomes found: 2011 (530 taxa)

Genome Info and Tools

Available Annotations

Acidovorax

Actinomyces

Actinomyces

sp. oral taxon 169

Actinomyces

gerencseriae

Actinomyces

naeslundii

Aggregatibacter

paraphrophilus

Arsenicoccus

sp. oral taxon 190

sp. oral taxon 416

CCUG 38953 ATCC BAA-55

RO-NN-1 (168 group)

TU-B-10 (W23 group)

Campylobacter

Capnocytophaga

Capnocytophaga

Capnocytophaga

sp. oral taxon 878

Capnocytophaga

sp. oral taxon 864

Capnocytophaga

Corynebacterium

massiliense

Corynebacterium

Corynebacterium

mastitidis

pneumosintes

DSM 11619 ATCC 33048

pneumosintes

sp. oral taxon 368

Enterococcus

Escherichia

non-K1 invasive clinical isolate

Escherichia

Escherichia

Escherichia

Escherichia

Escherichia

Escherichia

0157:H7 VT2 Sakai

Escherichia

Escherichia

Eubacterium

Eubacterium [XI][G-3]

Fusobacterium

sp. oral taxon 203

Fusobacterium

nucleatum subsp. nucleatum

Granulicatella

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

str.10810 (serotype B)

Helicobacter

gastric cancer1

Helicobacter

duodenal ulcer

Klebsiella

pneumoniae

sp. oral taxon 865

Lachnospiraceae

sp. oral taxon 096

Lachnospiraceae

sp. oral taxon 500

Lactobacillus

Lactobacillus

catenaforme

Leptotrichia

sp. oral taxon 847

Methanobrevibacter

Mobibacterium

Mogibacterium

Mogibacterium

VPI D10B-17, DSM 3998, ATCC 33092

Mycoplasma

Mycoplasma

meningitidis

meningitidis

gonorrhoeae

meningitidis

meningitidis

Novosphingobium

panipatense

sp. oral taxon 807

Oribacterium

sp. oral taxon 102

sp. oral taxon 894

Paenibacillus

glucanolyticus

Peptoniphilus

asaccharolyticus

UW 228, DSM 20463, ATCC 14963, NCIB 10074, NCTC 11

Peptostreptococcaceae

sp. oral taxon 081

Porphyrobacter

tepidarius

Porphyromonas

gingivalis

Prevotella

sp. oral taxon 475

Prevotella

sp. oral taxon 820

Prevotella

Prevotella

Prevotella

aurantianca

Prevotella

sp. oral taxon 314

Prevotella

Prevotella

Prevotella

Prevotella

sp. oral taxon 376

Prevotella

Propionibacterium

Pseudomonas

pseudoalcaligenes

Pseudomonas

aeruginosa

Pseudomonas

aeruginosa

Pseudomonas

aeruginosa

Pseudomonas

aeruginosa

clinical isolates pacs5296(lat

Pseudomonas

aeruginosa

Pseudomonas

aeruginosa

clinical isolates pacs416 (early)

Pseudomonas

Pyramidobacter

Pyramidobacter

Selenomonas

sp. oral taxon 149

Selenomonas

Selenomonas

Selenomonas

sp. oral taxon 126

Selenomonas

sp. oral taxon 920

sanguinegens

Sphingomonas

echinoides

Staphylococcus

epidermidis

Staphylococcus

Staphylococcus

Staphylococcus

aureus subsp. aureus

Staphylococcus

Staphylococcus

epidermidis

Staphylococcus

Staphylococcus

Michigan VRSA plasmids

Staphylococcus

Staphylococcus

Staphylococcus

Staphylococcus

auricularis

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

Streptococcus

pneumoniae

23F (Spanish 23F-1)

Streptococcus

sp. oral taxon 071

Streptococcus

Streptococcus

Streptococcus

sp. oral taxon 064

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

Streptococcus

sp. HMT 071

Tannerella

socranskii subsp. socranskii

pectinovorum

Veillonellaceae[G-1]

sp. oral taxon 155

Haemophilus

influenzae

meningitidis

Achromobacter

xylosoxidans

NH44784-1996

Achromobacter

xylosoxidans

NBRC 15126 = ATCC 27061

Acidovorax

Acinetobacter

Acinetobacter

Acinetobacter

Actinomyces

radicidentis

Actinomyces

sp. HMT 414

Actinomyces

Actinomyces

Actinomyces

naeslundii

Actinomyces

sp. HMT 171

Aerococcus

fdaargos_249

Aggregatibacter

actinomycetemcomitans

unknown strain A

Aggregatibacter

actinomycetemcomitans

Aggregatibacter

actinomycetemcomitans

Aggregatibacter

aphrophilus

Aggregatibacter

actinomycetemcomitans

Aggregatibacter

actinomycetemcomitans

Aggregatibacter

actinomycetemcomitans

Aggregatibacter

actinomycetemcomitans

unknown strain C

Aggregatibacter

actinomycetemcomitans

Aggregatibacter

paraphrophilus

Aggregatibacter

actinomycetemcomitans

Anaerolinea

thermophila

Anaerolineaceae [G-1]

bacterium HMT 439

Anaerolineae [G-1]

bacterium HMT 439

Anoxybacillus

flavithermus

Arcanobacterium

haemolyticum

DSM 20595, CCM, ATCC 9345

Arsenicicoccus

bolidensis

DSM 20469, IPP 1246, ATCC 33793

subsp. spizizenii TU-B-10

subsp. spizizenii str. W23

subsp. subtilis str. NCIB

strain A2012

subsp. subtilis RO-NN-1

Bacteroides

zoogleoformans

Bacteroides

heparinolyticus

Bifidobacterium

subsp. longum JCM 1217

Bifidobacterium

Bifidobacterium

Bifidobacterium

Bifidobacterium

ACS-071-V-Sch8b

Bifidobacterium

subsp. infantis ATCC 15697

Bifidobacterium

subsp. longum F8

Bifidobacterium

Bifidobacterium

Bifidobacterium

Bifidobacterium

Bifidobacterium

subsp. longum JDM301

Bifidobacterium

subsp. longum BBMN68

Bifidobacterium

Bifidobacterium

Bifidobacterium

Bifidobacterium

Bifidobacterium

Bordetella

Tohama I, ATCC BAA-589, NCTC-13251

Bordetella

Caldilinea

DSM 14535 = NBRC 104270

Campylobacter

Candidate division TM7 single-cell isolate

Candidatus Saccharibacteria

Candidatus Saccharimonas

aalborgensis

Capnocytophaga

DSM 7271, ATCC 27872, JCM 12966

Capnocytophaga

haemolytica

Capnocytophaga

sp. HMT 323

Chlamydophila

pneumoniae

Chlamydophila

pneumoniae

Chlamydophila

pneumoniae

Chlorobium

testosteroni

testosteroni

Corynebacterium

diphtheriae

Corynebacterium

diphtheriae

Corynebacterium

diphtheriae

Corynebacterium

amycolatum

Corynebacterium

amycolatum

Corynebacterium

diphtheriae

Corynebacterium

Corynebacterium

urealyticum

Corynebacterium

diphtheriae

Corynebacterium

diphtheriae

Corynebacterium

Corynebacterium

fdaargos_328

Corynebacterium

diphtheriae

Corynebacterium

diphtheriae

Corynebacterium

diphtheriae

Corynebacterium

urealyticum

Corynebacterium

diphtheriae

Corynebacterium

diphtheriae

Corynebacterium

kroppenstedtii

Corynebacterium

diphtheriae

Corynebacterium

pseudodiphtheriticum

Corynebacterium

pseudodiphtheriticum

Corynebacterium

Corynebacterium

diphtheriae

Cronobacter

Cryptobacterium

DSM 15641, ATCC 700683, 12-3T

Cutibacterium

TypeIA2 P.acn31

Cutibacterium

Cutibacterium

Cutibacterium

TypeIA2 P.acn17

Cutibacterium

Cutibacterium

Cutibacterium

KPA171202, DSM 16379

Cutibacterium

TypeIA2 P.acn33

Cutibacterium

acidovorans

acidovorans

SPH-1, ATCC15668

Desulfomicrobium

Desulfovibrio

fairfieldensis

pneumosintes

Eggerthella

DSM 2243, VPI 0255

Enterococcus

OG1RF, ATCC 47077

Escherichia

str. K12 substr. MG1655

Escherichia

IAI39 (O7:K1)

Escherichia

str. K12 substr. DH10B

Escherichia

Escherichia

O18ac:H7:K1 RS218 (NMEC)

Escherichia

Escherichia

Escherichia

Escherichia

Escherichia

Escherichia

Escherichia

B str. REL606

Escherichia

Escherichia

Escherichia

Escherichia

str. K-12 substr. MG1655

Escherichia

Escherichia

Escherichia

str. K-12 substr. DH10B

Escherichia

C str. ATCC 8739

Eubacterium

Fastidiosipila

Filifactor

Finegoldia

Fretibacterium

fastidiosum

Fretibacterium

fastidiosum

Fusobacterium

sp. HMT 203

Fusobacterium

nucleatum subsp. vincentii

Fusobacterium

nucleatum subsp. nucleatum

Fusobacterium

nucleatum subsp. nucleatum

Fusobacterium

nucleatum subsp. animalis

Fusobacterium

nucleatum subsp. animalis

Fusobacterium

nucleatum subsp. nucleatum

ChDC F316,KCOM 1322

Fusobacterium

nucleatum subsp. vincentii

ChDC F8,KCOM 1231

Fusobacterium

nucleatum subsp. animalis

Gardnerella

Gardnerella

Gardnerella

sp. HMT 928

Granulicatella

Haemophilus

parainfluenzae

Haemophilus

influenzae

Haemophilus

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

sp. HMT 036

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Helicobacter

Helicobacter

Helicobacter

Helicobacter

Helicobacter

Helicobacter

Ignavibacterium

Janibacter

Jonquetella

Klebsiella

rhizophila

fdaargos_302

Kytococcus

sedentarius

Lachnospiraceae [G-8]

bacterium HMT500

Lactobacillus

reuteri clade 818

Lactobacillus

reuteri clade 818

JCM 1112, F275

Lactobacillus

Lactobacillus

Lactobacillus

acidophilus

Lactobacillus

Lactobacillus

Lactobacillus

Lactobacillus

Lactobacillus

acidophilus

Lactobacillus

Lactobacillus

Lactobacillus

Lactobacillus

Lactobacillus

Lactobacillus

Lactobacillus

Lactobacillus

Lactobacillus

Lactobacillus

reuteri clade 818

F275, JCM 1112, DSM 20016

Lactobacillus

Lactobacillus

Lactococcus

Lactococcus

Lactococcus

Lactococcus

Lawsonella

clevelandensis

Leptotrichia

sp. HMT 212

Leptotrichia

goodfellowii

Leptotrichia

sp. HMT 498

Leptotrichia

sp. HMT 847

Leptotrichia

C-1013-b, DSM 1135, ATCC 14201, JCM 1296

monocytogenes

Finland 1988

monocytogenes

monocytogenes

monocytogenes

monocytogenes

monocytogenes

monocytogenes

monocytogenes

monocytogenes

serotype 4a str. L99

monocytogenes

monocytogenes

monocytogenes

monocytogenes

serotype 4b str. CLIP 80459

monocytogenes

Melioribacter

Mesorhizobium

Micavibrio

aeruginosavorus

Micrococcus

Mogibacterium

Mogibacterium

catarrhalis

catarrhalis

Mycobacterium

tuberculosis

Mycobacterium

tuberculosis

Mycobacterium

tuberculosis

Mycobacterium

tuberculosis

Mycobacterium

VKM Ac-1815D

Mycobacterium

tuberculosis

H37Rv (lab strain)

Mycobacterium

tuberculosis

Mycobacterium

Mycobacterium

tuberculosis

Mycobacterium

tuberculosis

Mycobacterium

Mycoplasma

genitalium

Mycoplasma

genitalium

G37, ATCC 33530

Mycoplasma

pneumoniae

Mycoplasma

genitalium

Mycoplasma

fermentans

Mycoplasma

Mycoplasma

pneumoniae

Mycoplasma

genitalium

Mycoplasma

pneumoniae

M129, ATCC29342

Mycoplasma

pneumoniae

Mycoplasma

fermentans

Mycoplasma

fermentans

Mycoplasma

genitalium

Mycoplasma

genitalium

meningitidis

meningitidis

meningitidis

meningitidis

meningitidis

meningitidis

serogroup C, FAM18

gonorrhoeae

FA 1090, ATCC 700825

meningitidis

meningitidis

serogroup A, Z2491

meningitidis

8013 (serogroup C)

meningitidis

meningitidis

DSM 7084, VPI, ATCC 49627

sp. HMT 807

Oribacterium

asaccharolyticum

sp. HMT 894

Paenibacillus

glucanolyticus

Paenibacillus

glucanolyticus

Parascardovia

denticolens

Peptoniphilaceae [G-3]

bacterium HMT 929

Peptoniphilus

sp. HMT 375

Peptostreptococcaceae [XI][G-1]

[Eubacterium] sulci

Peptostreptococcaceae [XI][G-5]

[Eubacterium] saphenum

Porphyromonas

gingivalis

Porphyromonas

gingivalis

Porphyromonas

gingivalis

Porphyromonas

gingivalis

Porphyromonas

gingivalis

Porphyromonas

gingivalis

Porphyromonas

gingivalis

Porphyromonas

gingivalis

Porphyromonas

asaccharolytica

Porphyromonas

gingivalis

Prevotella

Prevotella

Pseudomonas

Pseudomonas

aeruginosa

Pseudomonas

fluorescens

Pseudomonas

aeruginosa

Pseudomonas

aeruginosa

Pseudomonas

ATCC 17588 = LMG 11199

Pseudomonas

aeruginosa

Pseudomonas

fluorescens

Pseudomonas

aeruginosa

Pseudomonas

A1501, CGMCC 0351

Pseudomonas

fluorescens

Pseudomonas

aeruginosa

Pseudomonas

Pseudomonas

fluorescens

Pseudomonas

Pseudomonas

fluorescens

Pseudomonas

aeruginosa

Pseudomonas

pseudoalcaligenes

Pseudomonas

aeruginosa

Pseudomonas

fluorescens

Pseudopropionibacterium

propionicum

Pseudopropionibacterium

propionicum

dentocariosa

mucilaginosa

Saccharibacteria (TM7) [G-1]

bacterium HMT 957

Saccharibacteria (TM7) [G-1]

bacterium HMT 952

Saccharibacteria (TM7) [G-1]

bacterium HMT 952

Saccharibacteria (TM7) [G-1]

bacterium HMT 488

Saccharibacteria (TM7) [G-8]

bacterium HMT 955

Sanguibacter

odontolytica

Selenomonas

sp. HMT 478

Selenomonas

sp. HMT 126

marcescens

amnii [Not Validly Published]

Staphylococcus

Staphylococcus

Staphylococcus

Staphylococcus

Staphylococcus

pettenkoferi

fdaargos_288

Staphylococcus

Staphylococcus

Staphylococcus

Staphylococcus

lugdunensis

fdaargos_143

Staphylococcus

Staphylococcus

Staphylococcus

aureus subsp. aureus

Staphylococcus

Staphylococcus

schleiferi

Stenotrophomonas

maltophilia

Stenotrophomonas

maltophilia

Stenotrophomonas

maltophilia

Stenotrophomonas

maltophilia

Stenotrophomonas

maltophilia

Streptococcus

pneumoniae

Streptococcus

Streptococcus

Streptococcus

Streptococcus

pneumoniae

Streptococcus

Streptococcus

intermedius

Streptococcus

pneumoniae

Streptococcus

Streptococcus

constellatus

subsp. pharyngis C232

Streptococcus

pneumoniae

Streptococcus

salivarius

Streptococcus

agalactiae

Streptococcus

cristatus clade 578

Streptococcus

salivarius

CCHSS3, JIM8780

Streptococcus

agalactiae

Streptococcus

pneumoniae

Streptococcus

MGAS9429, ATCC BAA-1315

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

M1 MGAS5005, ATCC BAA-947

Streptococcus

Streptococcus

parasanguinis clade 721

Streptococcus

pneumoniae

Streptococcus

MGAS10750, ATCC BAA-1066

Streptococcus

Manfredo (M5) M5

Streptococcus

Streptococcus

oralis subsp. oralis

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

Streptococcus

intermedius

Streptococcus

pneumoniae

Streptococcus

SF370 (serotype M1 GAS), ATCC 700294

Streptococcus

intermedius

Streptococcus

constellatus

subsp. pharyngis C1050

Streptococcus

infantis clade 431

F0610 (5-114)

Streptococcus

pneumoniae

Streptococcus

agalactiae

Streptococcus

salivarius

Streptococcus

pneumoniae

Taiwan19F-14

Streptococcus

pneumoniae

Streptococcus

Streptococcus

subsp. whileyi MAS624

Streptococcus

MGAS8232, ATCC BAA-572

Streptococcus

agalactiae

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

MGAS315, ATCC BAA-595

Streptococcus

sp. HMT 056

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

M6 MGAS10394, ATCC BAA-946

Streptococcus

Challis CH1, ATCC 35105, NCTC7868

Streptococcus

thermophilus

Streptococcus

pneumoniae

Streptococcus

UA159, ATCC 700610

Streptococcus

pneumoniae

Streptococcus

constellatus

subsp. pharyngis C818

Streptococcus

pneumoniae

Streptococcus

Streptococcus

pneumoniae

Streptococcus

oralis subsp. tigurinus clade 070

Streptococcus

sp. oral taxon 056

Streptococcus

Streptococcus

pneumoniae

Hungary19A-6

Streptococcus

pneumoniae

Streptococcus

parasanguinis clade 721

Streptococcus

M28 MGAS6180, ATCC BAA-1064

Streptococcus

pneumoniae

Streptococcus

MGAS2096, ATCC BAA-1065

Synergistes

Tannerella

sp. HMT 286

Tannerella

sp. HMT 286

Tannerella

92A2 not ATCC 43037, FDC 338

Tannerella

sp. HMT 286

str. Nichols

subsp. pertenue str. CDC2

subsp. pallidum str. Chicago

maltophilum

ATCC 35405, DSM 14222

subsp. pertenue Gauthier

Fribourg-Blanc

subsp. pallidum str. Mexico A

subsp. pertenue str. SamoaD

Variovorax

Veillonella

Veillonella

DSM 2008, Te3, ATCC 10790, JCM 1297

Acinetobacter

Actinomyces

sp. HMT 897

Actinomyces

odontolyticus

ATCC 17982, DSM 43331

Anaerococcus

DSM 20548, PC1, ATCC 9321

sp. HMT 199

subsp. natto BEST195

Bifidobacterium

Bifidobacterium

Bifidobacterium

Bradyrhizobium

Burkholderia