HOMD :: Human Oral Microbiome Database

Home
Taxon Description
16S rRNA RefSeq
Genomes
Proteomes
- View genomic tree based on conserved proteins
- Download All Protein Sequences Annotated from Genomes
HOMD Tools
Download
HOMD Information
Page: HP1

16S rRNA Refseq V15.2 Genomic RefSeq V9.03

HOMD Genomes

Navigate genomes by Phylum:

Navigate genomes by alphabet:
A|B|C|D|E|F|G|H|I|J|K|L|M|N|O|P|Q|R|S|T|U|V|W|X|Y|Z|All Entries: 1558 genomes

genomes: Options [+]
In: Matching
	Sequencing Status: All Complete High Coverage Survey
	Annotation: All HOMD with StaticHOMD onlyStatic onlyNon-oral/nasal

No. of genomes found: 2011 (530 taxa)

Genome Info and Tools

Available Annotations

Acidovorax

Acinetobacter

Actinomyces

Actinomyces

sp. oral taxon 169

Actinomyces

gerencseriae

Actinomyces

naeslundii

Aggregatibacter

paraphrophilus

Arsenicoccus

sp. oral taxon 190

sp. oral taxon 416

CCUG 38953 ATCC BAA-55

RO-NN-1 (168 group)

TU-B-10 (W23 group)

Campylobacter

Capnocytophaga

Capnocytophaga

Capnocytophaga

sp. oral taxon 864

Capnocytophaga

sp. oral taxon 878

Capnocytophaga

Corynebacterium

massiliense

Corynebacterium

Corynebacterium

mastitidis

pneumosintes

sp. oral taxon 368

Escherichia

Escherichia

EPEC-E2348/69

Escherichia

Escherichia

O157:H7 str. GZ-021210/cattle

Eubacterium

Eubacterium [XI][G-3]

Fusobacterium

sp. oral taxon 203

Granulicatella

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

sp. oral taxon 865

Lachnospiraceae

sp. oral taxon 096

Lachnospiraceae

sp. oral taxon 500

Lactobacillus

catenaforme

Leptotrichia

sp. oral taxon 847

Methanobrevibacter

Mobibacterium

Mogibacterium

Mogibacterium

VPI D10B-17, DSM 3998, ATCC 33092

meningitidis

meningitidis

gonorrhoeae

meningitidis

Novosphingobium

panipatense

sp. oral taxon 807

Oribacterium

sp. oral taxon 102

sp. oral taxon 894

Paenibacillus

glucanolyticus

Peptoniphilus

asaccharolyticus

UW 228, DSM 20463, ATCC 14963, NCIB 10074, NCTC 11

Peptostreptococcaceae

sp. oral taxon 081

Porphyrobacter

tepidarius

Porphyromonas

gingivalis

Prevotella

sp. oral taxon 475

Prevotella

sp. oral taxon 820

Prevotella

Prevotella

Prevotella

aurantianca

Prevotella

sp. oral taxon 314

Prevotella

Prevotella

Prevotella

Prevotella

sp. oral taxon 376

Prevotella

Pseudomonas

pseudoalcaligenes

Pseudomonas

aeruginosa

Pseudomonas

aeruginosa

Pseudomonas

aeruginosa

clinical isolates pacs5296(lat

Pseudomonas

aeruginosa

Pseudomonas

Pyramidobacter

Pyramidobacter

Selenomonas

sp. oral taxon 149

Selenomonas

Selenomonas

Selenomonas

sp. oral taxon 126

Selenomonas

sp. oral taxon 920

sanguinegens

Sphingomonas

echinoides

Staphylococcus

Staphylococcus

aureus subsp. aureus

Staphylococcus

auricularis

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

sp. oral taxon 071

Streptococcus

Streptococcus

Streptococcus

sp. oral taxon 064

Streptococcus

sp. HMT 071

Tannerella

socranskii subsp. socranskii

pectinovorum

Veillonellaceae[G-1]

sp. oral taxon 155

Escherichia

O18ac:H7:K1 RS218 (NMEC)

Staphylococcus

Michigan VRSA plasmids

Finegoldia

Enterococcus

DSM 20478, ATCC 19433, NCTC 775, JCM 8726, NCDO 58

Ochrobactrum

Saccharibacteria (TM7) [G-1]

bacterium HMT 348

Enterococcus

Escherichia

Escherichia

non-K1 invasive clinical isolate

Escherichia

Escherichia

Escherichia

Escherichia

Escherichia

Haemophilus

influenzae

Helicobacter

gastric cancer1

Helicobacter

duodenal ulcer

Klebsiella

pneumoniae

meningitidis

Pseudomonas

aeruginosa

clinical isolates pacs416 (early)

Staphylococcus

epidermidis

Staphylococcus

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Pyramidobacter

Pyramidobacter

W5455 (JCVI)

Campylobacter

Gracilibacteria

JGI 0000069-P22

Campylobacter

Solobacterium

Alloprevotella

Veillonella

ATCC BAA-170, DSM 13220

Leptotrichia

Campylobacter

Peptostreptococcaceae [XI][G-1]

[Eubacterium] infirmum

ATCC 700433, NCTC 12940

Saccharibacteria (TM7) [G-1]

bacterium HMT 348

Aggregatibacter

actinomycetemcomitans

unknown strain A

Mycoplasma

genitalium

G-37 ATCC 33530

Mycoplasma

genitalium

Mycoplasma

genitalium

Mycoplasma

genitalium

Mycoplasma

genitalium

Mycoplasma

genitalium

G37, ATCC 33530

Mycoplasma

genitalium

Pyramidobacter

W5455 (TFI-JCVI)

Jonquetella

Mycoplasma

Mycoplasma

Desulfobulbus

sp. HMT 041

Candidate division TM7

Mycoplasma

Mycoplasma

Saccharibacteria (TM7) [G-1]

bacterium HMT 952

Saccharibacteria (TM7) [G-1]

bacterium HMT 952

Mycoplasma

Mycoplasma

salivarium

Desulfobulbus

sp. HMT 041

Desulfobulbus

sp. oral taxon 041

Candidate division TM7

JGI 0001002-L20

Gracilibacteria

JGI 0000069-K10

Mycoplasma

pneumoniae

Mycoplasma

pneumoniae

Saccharibacteria (TM7) [G-1]

bacterium HMT 957

Mycoplasma

pneumoniae

Mycoplasma

pneumoniae

Mycoplasma

pneumoniae

M129, ATCC29342

Mycoplasma

pneumoniae

Mycoplasma

pneumoniae

Saccharibacteria (TM7) [G-8]

bacterium HMT 955

Candidatus Saccharibacteria

Candidate division TM7 single-cell isolate

Haemophilus

influenzae

Aggregatibacter

actinomycetemcomitans

unknown strain B

Saccharibacteria (TM7) [G-1]

bacterium HMT 488

Mycoplasma

fermentans

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Haemophilus

influenzae

Mycoplasma

fermentans

Candidatus Saccharimonas

aalborgensis

Peptostreptococcaceae [XI][G-5]

[Eubacterium] saphenum

Chloroflexi

bacterium oral taxon 439

isolate Chl1

Absconditabacteria (SR1) [G-1]

bacterium HMT 874

Mycoplasma

fermentans

str. Nichols

subsp. pallidum str. Chicago

subsp. pertenue str. SamoaD

subsp. pertenue Gauthier

subsp. pertenue str. CDC2

subsp. pallidum str. Mexico A

Fribourg-Blanc

Anaerolineae [G-1]

bacterium HMT 439

isolate Chl2

Chlamydophila

pneumoniae

Chlamydophila

pneumoniae

Chlamydophila

pneumoniae

Chlamydophila

pneumoniae

Lactobacillus

Chlamydophila

pneumoniae

Lactobacillus

Lactobacillus

LEAF 3008A-a

pneumosintes

Lactobacillus

Lactobacillus

micraerophilus

Lactobacillus

SPIN 2503V10-D

Lactobacillus

sanguinegens

Lactobacillus

LactinV 01V1-a

pneumosintes

DSM 11619 ATCC 33048

Lactobacillus

LEAF 2062A-h1

Lactobacillus

LactinV 03V1-b

Lactobacillus

LactinV 11V1-d

Lactobacillus

LactinV 09V1-c

Lactobacillus

LEAF 2052A-d

Lactobacillus

Streptococcus

amnii [Not Validly Published]

Lactobacillus

LEAF 2053A-b

W1219, ATCC BAA-170, DSM 13220

lecithinolyticum

Parvimonas

sp. HMT 393

Gardnerella

DSM 20469, IPP 1246, ATCC 33793

Eubacterium[11][G-3]

Peptostreptococcaceae [XI][G-9]

[Eubacterium] brachy

Gardnerella

Parvimonas

sp. HMT 110

Helicobacter

HPKX_438_CA4C1

Helicobacter

Peptoniphilus

sp. HMT 386

Helicobacter

Helicobacter

Gardnerella

594, ATCC 14018, NCTC 10287

Lactobacillus

Helicobacter

Gardnerella

Helicobacter

Lactobacillus

Lactobacillus

Gardnerella

Cryptobacterium

DSM 15641, ATCC 700683, 12-3T

Peptoniphilus

lacrimalis

ATCC 49626, VPI D140H-11A

Streptococcus

Helicobacter

Helicobacter

Peptoniphilaceae [G-3]

bacterium HMT 929

Helicobacter

Gardnerella

Gardnerella

Gardnerella

Helicobacter

sp. HMT 199

Gardnerella

Helicobacter

Gardnerella

Helicobacter

Jonquetella

Lactobacillus

Bartonella

schoenbuchensis

Parvimonas

Helicobacter

Lactobacillus

Candidate division TM7 single-cell isolate

Anaerococcus

ACS-065-V-Col13

Fusobacterium

gonidiaformans

Campylobacter

ureolyticus

ACS-301-V-Sch3b

Haemophilus

Peptoniphilus

lacrimalis

Parvimonas

Streptococcus

Lactobacillus

coleohominis

Gardnerella

Veillonella

sp. HMT 780

Peptostreptococcaceae [XI][G-1]

[Eubacterium] sulci

Campylobacter

ureolyticus

Granulicatella

Streptococcus

infantis clade 638

Lactobacillus

Streptococcus

morbillorum

Streptococcus

infantis clade 638

Haemophilus

influenzae

Megasphaera

micronuciformis

Chloroflexi

bacterium oral taxon 439

isolate Chl1-2

sp. HMT 928

Streptococcus

catarrhalis

Streptococcus

Peptoniphilus

Campylobacter

Lactobacillus

Campylobacter

Lactobacillus

Lactobacillus

Streptococcus

Fastidiosipila

Jonquetella

Alloscardovia

omnicolens

Streptococcus

infantis clade 638

Anaeroglobus

Streptococcus

Streptococcus

Haemophilus

influenzae

F0304, DSM 10107

Streptococcus

Haemophilus

sp. HMT 036

Mogibacterium

Alloiococcus

Haemophilus

influenzae

Streptococcus

Fusobacterium

massiliense

Marseille-P2749

Haemophilus

influenzae

catarrhalis

Streptococcus

Mogibacterium

monocytogenes

Streptococcus

Haemophilus

influenzae

Streptococcus

Helicobacter

HPKX_438_AG0C1

Lactobacillus

Streptococcus

Streptococcus

Streptococcus

Haemophilus

haemolyticus

Lactobacillus

Streptococcus

Haemophilus

influenzae

Finegoldia

ACS-171-V-Col3

Haemophilus

influenzae

Peptostreptococcaceae [XI][G-6]

[Eubacterium] nodatum

Haemophilus

influenzae

Streptococcus

Peptoniphilus

acs_146_v_sch2b

Streptococcus

MGAS9429, ATCC BAA-1315

Haemophilus

influenzae

Streptococcus

M1 MGAS5005, ATCC BAA-947

Haemophilus

haemolyticus

Streptococcus

constellatus

subsp. constellatus SK53

Streptococcus

Manfredo (M5) M5

Campylobacter

Alloscardovia

omnicolens

Streptococcus

oralis subsp. dentisani clade 398

Streptococcus

oralis subsp. dentisani clade 058

Peptoniphilus

lacrimalis

Haemophilus

influenzae

Streptococcus

Streptococcus

SF370 (serotype M1 GAS), ATCC 700294

Streptococcus

oralis subsp. oralis

catarrhalis

Aggregatibacter

actinomycetemcomitans

serotype d str. SA3733

Streptococcus

MGAS2096, ATCC BAA-1065

Streptococcus

Dolosigranulum

Mogibacterium

catarrhalis

Haemophilus

influenzae

catarrhalis

Lactobacillus

Streptococcus

infantis clade 638

Streptococcus

vestibularis

Streptococcus

Haemophilus

influenzae

Desulfobulbus

sp. oral taxon 041

Haemophilus

influenzae

Lactobacillus

Streptococcus

Haemophilus

influenzae

Lactobacillus

Anaerococcus

sp. HMT 290

Peptoniphilus

sp. HMT 187

Streptococcus

oralis subsp. oralis

ATCC 35037, SK23, NCTC11427

Haemophilus

haemolyticus

Haemophilus

influenzae

Lactobacillus

Anaerococcus

lactolyticus

Haemophilus

influenzae

Haemophilus

influenzae

Streptococcus

oralis subsp. oralis

Streptococcus

Parascardovia

denticolens

Streptococcus

Streptococcus

Lactobacillus

Streptococcus

MGAS8232, ATCC BAA-572

Peptoniphilus

Parascardovia

denticolens

Streptococcus

M28 MGAS6180, ATCC BAA-1064

Streptococcus

M6 MGAS10394, ATCC BAA-946

Lachnoanaerobaculum

sp. HMT 083

catarrhalis

Streptococcus

MGAS315, ATCC BAA-595

Actinomyces

lingnae [Not Validly Published]

catarrhalis

catarrhalis

Haemophilus

parainfluenzae

Aggregatibacter

actinomycetemcomitans

serotype e str. ANH9776

Streptococcus

infantis clade 638

Peptostreptococcaceae [XI][G-6] [Eubacterium]

Lactobacillus

Streptococcus

intermedius

Peptostreptococcaceae [XI][G-1]

[Eubacterium] infirmum

Streptococcus

Haemophilus

influenzae

catarrhalis

Streptococcus

oralis subsp. oralis

Haemophilus

influenzae

Haemophilus

haemolyticus

Lawsonella

clevelandensis

Streptococcus

oralis subsp. oralis

Bifidobacterium

haemolysans

Finegoldia

Streptococcus

mitis biovar 2

Streptococcus

oralis subsp. dentisani clade 398

Streptococcus

Finegoldia

Streptococcus

oralis subsp. oralis

Streptococcus

intermedius

Streptococcus

infantis clade 638

ATCC BAA-102

Anaerococcus

Peptoniphilus

sp. HMT 187

Haemophilus

sp. HMT 036

Streptococcus

Streptococcus

Lactobacillus

Streptococcus

Streptococcus

thermophilus

Fusobacterium

gonidiaformans

Filifactor

Erysipelothrix

tonsillarum

Haemophilus

influenzae

Bifidobacterium

Bifidobacterium

Streptococcus

intermedius

Bifidobacterium

Streptococcus

intermedius

Streptococcus

constellatus

subsp. pharyngis C232

Streptococcus

constellatus

subsp. pharyngis C818

Streptococcus

MGAS10750, ATCC BAA-1066

Campylobacter

Streptococcus

oralis subsp. oralis

Bifidobacterium

Bifidobacterium

Bifidobacterium

Bifidobacterium

Bifidobacterium

catarrhalis

Bifidobacterium

Aggregatibacter

actinomycetemcomitans

serotype d str. SA508

Bifidobacterium

Streptococcus

sp. HMT 056

Streptococcus

sp. oral taxon 056

Streptococcus

Bifidobacterium

catenaformis

OT 569 = DSM 20559

catenaformis

Streptococcus

infantis clade 638

Haemophilus

haemolyticus

Veillonella

denticariosi

Granulicatella

sp. HMT 810

catarrhalis

Lactobacillus

acidophilus

Haemophilus

parainfluenzae

Peptoniphilus

sp. HMT 375

Streptococcus

intermedius

Lactobacillus

acidophilus

catarrhalis

Haemophilus

influenzae

Campylobacter

Streptococcus

Lactobacillus

Streptococcus

oralis subsp. oralis

Streptococcus

intermedius

Fusobacterium

necrophorum

catarrhalis

Haemophilus

monocytogenes

Streptococcus

constellatus

subsp. pharyngis SK1060

Streptococcus

intermedius

Lactobacillus

Lactobacillus

salivarius

Lactobacillus

Campylobacter

Lactobacillus

Haemophilus

parainfluenzae

Streptococcus

Haemophilus

parainfluenzae

Streptococcus

oralis subsp. tigurinus clade 071

73H25AP, F0408

Streptococcus

Haemophilus

influenzae

Streptococcus

cristatus clade 578

Staphylococcus

Haemophilus

influenzae

Lactobacillus

Arcanobacterium

haemolyticum

DSM 20595, CCM, ATCC 9345

Streptococcus

pneumoniae

str. Canada MDR_19F

Finegoldia

Streptococcus

oralis subsp. oralis

Streptococcus

Lactobacillus

acidophilus

CIRM-BIA 442

Haemophilus

haemolyticus

Peptostreptococcus

DSM 17678, W2278

Peptostreptococcus

anaerobius

VPI 4330, ATCC 27337

Streptococcus

parasanguinis clade 721

Streptococcus

constellatus

subsp. pharyngis C1050

Lactobacillus

acidophilus

Lactobacillus

acidophilus

Lactobacillus

Lactobacillus

acidophilus

Streptococcus

Lactobacillus

Finegoldia

Campylobacter

Lactobacillus

salivarius

Streptococcus

intermedius

Veillonella

KON, ATCC 17744

Streptococcus

pneumoniae

Anaerococcus

DSM 20548, PC1, ATCC 9321

Lactobacillus

reuteri clade 818

F275, JCM 1112, DSM 20016

Aggregatibacter

actinomycetemcomitans

serotype e str. SA2149

monocytogenes

Streptococcus

agalactiae

Streptococcus

oralis subsp. tigurinus clade 070

Streptococcus

pneumoniae

Lactobacillus

acidophilus

CIRM-BIA 445

Parascardovia

denticolens

Aerococcus

fdaargos_249

Streptococcus

oralis subsp. oralis

Lactobacillus

Lactobacillus

Haemophilus

influenzae

Haemophilus

parainfluenzae

Solobacterium

Streptococcus

pneumoniae

Lactobacillus

Aggregatibacter

Streptococcus

sp. HMT 064

Streptococcus

Lactobacillus

reuteri clade 818

Streptococcus

cristatus clade 578

Aggregatibacter

sp. HMT 458

Streptococcus

pneumoniae

Lactobacillus

salivarius

Lactobacillus

Streptococcus

Streptococcus

cristatus clade 578

Lactobacillus

acidophilus

Streptococcus

oralis subsp. oralis

Streptococcus

oralis subsp. dentisani clade 398

Streptococcus

Haemophilus

paraphrohaemolyticus

Streptococcus

vestibularis

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Haemophilus

parainfluenzae

Streptococcus

agalactiae

Streptococcus

pneumoniae

Streptococcus

cristatus clade 578

Streptococcus

Streptococcus

pneumoniae

Streptococcus

pneumoniae

str. Canada MDR_19A

Streptococcus

Aggregatibacter

actinomycetemcomitans

Haemophilus

parahaemolyticus

polysaccharea

Streptococcus

pneumoniae

Finegoldia

SY403409CC001050417

Streptococcus

UA159, ATCC 700610

gonorrhoeae

gonorrhoeae

gonorrhoeae

Aggregatibacter

actinomycetemcomitans

serotype c str. SCC2302

gonorrhoeae

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Streptococcus

pneumoniae

Fusobacterium

nucleatum subsp. vincentii

ChDC F8,KCOM 1231

Streptococcus

pneumoniae

Lactobacillus

reuteri clade 818

JCM 1112, F275

Porphyromonas

Streptococcus

pneumoniae

Aggregatibacter

actinomycetemcomitans

serotype b str. SCC1398

Lactobacillus

Abiotrophia

gonorrhoeae

Lactobacillus

salivarius

ACS-116-V-Col5a