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Post subject: Genome Annotation Update - Pyramidobacter piscolens W5455 (TFI)  PostPosted: May 10, 2017 - 03:10 AM



Joined: Dec 31, 1969
Posts: 16777215

Automatic annotation for the genome - Pyramidobacter piscolens W5455 (TFI) has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation


Summary of the annotation:

Full Name: Pyramidobacter piscolens W5455 (TFI)
SEQ_ID: SEQF1474

Total contigs received: 385
Total bps received: 276552
Average GC%: 59.3 (of total bps received)

Longest contig: 2231 bps
Shortest contig: 138 bps
Contigs 100 - 300 bps: 9
Contigs 301 - 500 bps: 26
Contigs 501 - 1000 bps: 291
Contigs 1001 - 1500 bps: 53
Contigs > 1500 bps: 6

Total ORFs*: 533

Total BLASTP hits against NCBI nr: 472
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 264
SwissProt protein database dated: 2016-05-11

ORFs with KEGG hits: 98
ORFs with GO hits: 34

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

~The HOMD Team~
 
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