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Post subject: Genome Annotation Update - Stenotrophomonas nitritireducens DSM 12575  PostPosted: May 10, 2017 - 01:56 AM



Joined: Dec 31, 1969
Posts: 16777215

Automatic annotation for the genome - Stenotrophomonas nitritireducens DSM 12575 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation


Summary of the annotation:

Full Name: Stenotrophomonas nitritireducens DSM 12575
SEQ_ID: SEQF2803

Total contigs received: 95
Total bps received: 3983487
Average GC%: 68.34 (of total bps received)

Longest contig: 322412 bps
Shortest contig: 513 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 43
Contigs 1001 - 1500 bps: 7
Contigs > 1500 bps: 45

Total ORFs*: 3561

Total BLASTP hits against NCBI nr: 3400
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 2448
SwissProt protein database dated: 2016-05-11

ORFs with KEGG hits: 874
ORFs with GO hits: 401

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

~The HOMD Team~
 
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