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Post subject: Genome Annotation Update - Scardovia wiggsiae F0424  PostPosted: May 09, 2017 - 08:13 PM

Joined: Dec 31, 1969
Posts: 16777215

Automatic annotation for the genome - Scardovia wiggsiae F0424 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation

Summary of the annotation:

Full Name: Scardovia wiggsiae F0424

Total contigs received: 6
Total bps received: 1552186
Average GC%: 52.96 (of total bps received)

Longest contig: 556779 bps
Shortest contig: 32517 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 0
Contigs 1001 - 1500 bps: 0
Contigs > 1500 bps: 6

Total ORFs*: 1298

Total BLASTP hits against NCBI nr: 1242
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 886
SwissProt protein database dated: 2016-05-11

ORFs with KEGG hits: 336
ORFs with GO hits: 144

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to

~The HOMD Team~
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