This forum is locked: you cannot post, reply to, or edit topics.   This topic is locked: you cannot edit posts or make replies.
View previous topic Printable version Log in to check your private messages View next topic
Author Message
Post subject: Genome Annotation Update - Streptococcus salivarius SK126  PostPosted: Feb 25, 2016 - 08:33 PM

Joined: Dec 31, 1969
Posts: 16777215

Automatic annotation for the genome - Streptococcus salivarius SK126 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation

Summary of the annotation:

Full Name: Streptococcus salivarius SK126

Total contigs received: 101
Total bps received: 2128332
Average GC%: 40.06 (of total bps received)

Longest contig: 395230 bps
Shortest contig: 500 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 2
Contigs 501 - 1000 bps: 62
Contigs 1001 - 1500 bps: 5
Contigs > 1500 bps: 34

Total ORFs*: 2018

Total BLASTP hits against NCBI nr: 2000
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 1483
SwissProt protein database dated: 2014-12-01

ORFs with KEGG hits: 553
ORFs with GO hits: 196

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to

~The HOMD Team~
 View user's profile Send private message  
Reply with quote Back to top
Display posts from previous:     
Jump to:  
Powered by PNphpBB2 © 2003-2006 The PNphpBB Group

Copyright 2007-2019 The Forsyth Institute