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Post subject: Genome Annotation Update - Streptococcus pneumoniae AP200  PostPosted: Feb 25, 2016 - 09:14 AM



Joined: Dec 31, 1969
Posts: 16777215

Automatic annotation for the genome - Streptococcus pneumoniae AP200 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation


Summary of the annotation:

Full Name: Streptococcus pneumoniae AP200
SEQ_ID: SEQF1929

Total contigs received: 1
Total bps received: 2130580
Average GC%: 39.51 (of total bps received)

Longest contig: 2130580 bps
Shortest contig: 2130580 bps
Contigs 100 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 0
Contigs 1001 - 1500 bps: 0
Contigs > 1500 bps: 1

Total ORFs*: 2230

Total BLASTP hits against NCBI nr: 2229
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 1541
SwissProt protein database dated: 2014-12-01

ORFs with KEGG hits: 576
ORFs with GO hits: 180

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

~The HOMD Team~
 
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