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Post subject: Genome Annotation Update - Selenomonas sp. oral taxon 138 F0429  PostPosted: Feb 24, 2016 - 12:33 PM



Joined: Dec 31, 1969
Posts: 16777215

Automatic annotation for the genome - Selenomonas sp. oral taxon 138 F0429 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation


Summary of the annotation:

Full Name: Selenomonas sp. oral taxon 138 F0429
SEQ_ID: SEQF1951

Total contigs received: 117
Total bps received: 2387334
Average GC%: 56.84 (of total bps received)

Longest contig: 109064 bps
Shortest contig: 303 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 8
Contigs 501 - 1000 bps: 24
Contigs 1001 - 1500 bps: 7
Contigs > 1500 bps: 71

Total ORFs*: 2309

Total BLASTP hits against NCBI nr: 2291
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 1663
SwissProt protein database dated: 2014-12-01

ORFs with KEGG hits: 635
ORFs with GO hits: 223

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

~The HOMD Team~
 
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