16S rRNA Refseq V15.21 Genomic RefSeq V9.12

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Post subject: Genome Annotation Update - Pseudomonas aeruginosa LESB58  PostPosted: Oct 04, 2013 - 05:47 AM



Joined: Dec 31, 1969
Posts: 16777215

Automatic annotation for the genome - Pseudomonas aeruginosa LESB58 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer


Summary of the annotation:

Full Name: Pseudomonas aeruginosa LESB58
SEQ_ID: SEQF1619

Total contigs received: 1
Total bps received: 6601757
Minimal contig size accepted: 100
Contigs rejected*: 0
Contigs accepted: 1
Total accepted bps: 6601757
Average GC%: 66.3 (of total bps received)

Longest contig: 6601757 bps
Shortest contig: 6601757 bps
Contigs 100 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 0
Contigs 1001 - 1500 bps: 0
Contigs > 1500 bps: 1

Total ORFs: 39876
Full ORFs**: 39876
Partial ORFs***: 0

Total BLASTP hits against NCBI nr: 10410
NCBI nr protein database dated: 2013-09-26

Total BLASTP hits against SwissProt: 4415
SwissProt protein database dated: 2013-09-18

ORFs with KEGG hits: 1528
ORFs with GO hits: 752
* contig rejected due to length smaller than the minimal cutoff 100 bps
** Minimal size of full ORFs = 50 a.a. (150 n.a.)
*** Minimal size of partial ORFs = 0 aa. ( n.a.)
**** Definition of partial ORFs: a reading frame without start or stop codon

Please address your questions to homd_curator@homd.org

~The HOMD Team~
 
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