16S rRNA Refseq V15.2 Genomic RefSeq V9.03

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Post subject: Genome Annotation Update -  PostPosted: Feb 27, 2017 - 09:51 PM

Joined: Dec 31, 1969
Posts: 16777215

Automatic annotation for the genome - has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation

Summary of the annotation:

Full Name:

Total contigs received: 1
Total bps received: 847999
Average GC%: 50.81 (of total bps received)

Longest contig: 847999 bps
Shortest contig: 847999 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 0
Contigs 1001 - 1500 bps: 0
Contigs > 1500 bps: 1

Total ORFs*: 872

Total BLASTP hits against NCBI nr: 722
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 485
SwissProt protein database dated: 2016-05-11

ORFs with KEGG hits: 159
ORFs with GO hits: 63

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

~The HOMD Team~
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