HOMD :: View topic - Genome Annotation Update - Selenomonas sputigena ATCC 35185

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Update by program1 - Genome Annotation Update - Selenomonas sputigena ATCC 35185

autoupdate - Feb 26, 2016 - 06:54 PM
Post subject: Genome Annotation Update - Selenomonas sputigena ATCC 35185

Automatic annotation for the genome - Selenomonas sputigena ATCC 35185 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation

Summary of the annotation:

Full Name: Selenomonas sputigena ATCC 35185
SEQ_ID: SEQF1598

Total contigs received: 61
Total bps received: 2553953
Average GC%: 57.12 (of total bps received)

Longest contig: 339074 bps
Shortest contig: 452 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 3
Contigs 501 - 1000 bps: 5
Contigs 1001 - 1500 bps: 2
Contigs > 1500 bps: 50

Total ORFs*: 2375

Total BLASTP hits against NCBI nr: 2338
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 1647
SwissProt protein database dated: 2014-12-01

ORFs with KEGG hits: 599
ORFs with GO hits: 230

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

~The HOMD Team~