HOMD

Update by program1 - Genome Annotation Update - Selenomonas sp. oral taxon 137 F0430

autoupdate - Feb 24, 2016 - 08:13 AM
Post subject: Genome Annotation Update - Selenomonas sp. oral taxon 137 F0430
Automatic annotation for the genome - Selenomonas sp. oral taxon 137 F0430 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation


Summary of the annotation:

Full Name: Selenomonas sp. oral taxon 137 F0430
SEQ_ID: SEQF1858

Total contigs received: 15
Total bps received: 2475066
Average GC%: 56.73 (of total bps received)

Longest contig: 547450 bps
Shortest contig: 777 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 1
Contigs 1001 - 1500 bps: 0
Contigs > 1500 bps: 14

Total ORFs*: 2379

Total BLASTP hits against NCBI nr: 2339
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 1695
SwissProt protein database dated: 2014-12-01

ORFs with KEGG hits: 609
ORFs with GO hits: 219

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

~The HOMD Team~
All times are GMT - 12 Hours
Powered by PNphpBB2 © 2003-2006 The PNphpBB Group
Credits