HOMD

Update by program1 - Genome Annotation Update - Streptococcus sp. oral taxon 066 F0442

autoupdate - Feb 23, 2016 - 02:53 PM
Post subject: Genome Annotation Update - Streptococcus sp. oral taxon 066 F0442
Automatic annotation for the genome - Streptococcus sp. oral taxon 066 F0442 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation


Summary of the annotation:

Full Name: Streptococcus sp. oral taxon 066 F0442
SEQ_ID: SEQF1889

Total contigs received: 13
Total bps received: 2224000
Average GC%: 41.77 (of total bps received)

Longest contig: 533959 bps
Shortest contig: 551 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 2
Contigs 1001 - 1500 bps: 1
Contigs > 1500 bps: 10

Total ORFs*: 2197

Total BLASTP hits against NCBI nr: 2156
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 1500
SwissProt protein database dated: 2014-12-01

ORFs with KEGG hits: 558
ORFs with GO hits: 188

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

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