HOMD

Update by program1 - Genome Annotation Update - Streptococcus oligofermentans AS 1.3089

autoupdate - Feb 22, 2016 - 06:33 PM
Post subject: Genome Annotation Update - Streptococcus oligofermentans AS 1.3089
Automatic annotation for the genome - Streptococcus oligofermentans AS 1.3089 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation


Summary of the annotation:

Full Name: Streptococcus oligofermentans AS 1.3089
SEQ_ID: SEQF2520

Total contigs received: 1
Total bps received: 2142100
Average GC%: 42.07 (of total bps received)

Longest contig: 2142100 bps
Shortest contig: 2142100 bps
Contigs 100 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 0
Contigs 1001 - 1500 bps: 0
Contigs > 1500 bps: 1

Total ORFs*: 2195

Total BLASTP hits against NCBI nr: 2151
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 1416
SwissProt protein database dated: 2014-12-01

ORFs with KEGG hits: 504
ORFs with GO hits: 172

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

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