HOMD

Update by program1 - Genome Annotation Update - Selenomonas noxia ATCC 43541

autoupdate - Feb 22, 2016 - 02:33 PM
Post subject: Genome Annotation Update - Selenomonas noxia ATCC 43541
Automatic annotation for the genome - Selenomonas noxia ATCC 43541 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation


Summary of the annotation:

Full Name: Selenomonas noxia ATCC 43541
SEQ_ID: SEQF1593

Total contigs received: 56
Total bps received: 2039467
Average GC%: 55.87 (of total bps received)

Longest contig: 290500 bps
Shortest contig: 534 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 8
Contigs 1001 - 1500 bps: 8
Contigs > 1500 bps: 40

Total ORFs*: 1977

Total BLASTP hits against NCBI nr: 1959
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 1470
SwissProt protein database dated: 2014-12-01

ORFs with KEGG hits: 568
ORFs with GO hits: 195

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

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