Home Login Register Reset Password Taxon Description Taxon Table Taxonomic Hierarchy Taxonomic Level Download Taxonomy Data 16S rRNA RefSeq Identify 16S rRNA using BLASTN View 16S rRNA RefSeq Phylogenetic Tree Download 16S rRNA RefSeq & Taxonomy HOMD 16S rRNA RefSeq Version History Genomes Taxa with Annotated Genomes All Oral Genomes All Genomes HOMD JBrowse Genome Viewer » Select an HOMD genome to view in JBrowse Upload your own reference sequence HOMD only! Genomic Trees » PhyloPhlAn Conserved Protein Tree Ribosomal Protein Tree 16S rRNA Gene Tree Download Genomic Data HOMD Reference Genome Version History Proteomes View genomic tree based on conserved proteins Download All Protein Sequences Annotated from Genomes HOMD Tools HOMD JBrowse Genome Viewer » Select an HOMD genome to view in JBrowse Upload your own reference sequence HOMD only! Genome Annotations BLAST Against HOMD Genomes » BLAST against a genome BLAST against all genomes Download Download HOMD Data HOMD FTP Site HOMD Posters Oralgen Archive » Oralgen Archive Oralgen Genome Info HOMD Information How to Cite HOMD How to Use This Page » User's Guide Hands on Guide to HOMD Quick Tour to HOMD 2015 Project Description Strains and DNA Availability People Contact Us Mailing List Usage Statistics Site Map Page: HP1 16S rRNA Refseq V15.2 Genomic RefSeq V9.03

HOMD Genomes  Navigate genomes by Phylum:  Select a phylumActinobacteriaBacteroidetesChlamydiaeChloroflexiEuryarchaeotaFirmicutesFusobacteriaGN02ProteobacteriaSpirochaetesSR1SynergistetesTenericutesTM7  Navigate genomes by alphabet:  A|B|C|D|E|F|G|H|I|J|K|L|M|N|O|P|Q|R|S|T|U|V|W|X|Y|Z|All Entries: 1558 genomes   genomes: Options [+] In: All fieldsTaxon IDGenusSpeciesCulture collectionIsolation originSequence statusSequence centerSEQ ID Matching ALL wordsANY wordsExact phrase Partial fieldWhole field   Sequencing Status: All Complete High Coverage Survey  Annotation: All HOMD with StaticHOMD onlyStatic onlyNon-oral/nasal  No. of genomes starting with Y: 25  Taxon ID* Genus * Species * Strain/Culture Collection * SEQ ID * No. of contigs & singlets * Combined length (bp) * Genome Info and Tools Available Annotations HMT-827 Yersinia pestis biovar Orientalis str. India 195 SEQF1566 33 4,719,608 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Mediaevalis str. K1973002 SEQF1563 73 4,720,694 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Antiqua str. B42003004 SEQF1560 69 4,841,690 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis CA88-4125 SEQF1556 10 4,825,390 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis Antiqua JGI SEQF1054 4 4,879,836 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Microtus str. 91001 SEQF1082 5 4,803,217 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis Z176003 SEQF2188 4 4,725,788 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis A1122 SEQF2184 3 4,658,411 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Orientalis str. MG05-1020 SEQF1568 80 4,977,609 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Orientalis str. F1991016 SEQF1565 107 4,892,085 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Antiqua str. UG05-0454 SEQF1562 98 4,838,246 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis Pestoides A SEQF1559 37 4,750,606 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis Angola SEQF1555 3 4,687,014 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis KIM10+ SEQF1056 2 4,701,745 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis Pestoides F SEQF1099 3 4,725,862 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis D182038 SEQF2186 4 4,802,263 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis KIM D27 SEQF1844 9 4,681,648 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Orientalis str. IP275 SEQF1567 102 5,322,065 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Medievalis str. Harbin 35 SEQF1564 4 4,709,501 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Antiqua str. E1979001 SEQF1561 75 4,847,813 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis Nepal516 SEQF1558 23 4,629,080 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis CO92 SEQF1055 4 4,829,855 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis Nepal516 SEQF1057 3 4,646,286 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis D106004 SEQF2185 4 4,812,922 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD HMT-827 Yersinia pestis biovar Orientalis str. PEXU2 SEQF1569 5 4,770,886 Taxon Desc Genome Info Genome Viewer BLAST PROKKA NCBI HOMD *  Click to toggle the sorting order.          Data last updated on :2019-10-09 15:25:32

---

Copyright 2007-2019 The Forsyth Institute