Home
Login
Register
Reset Password
Taxon Description
Taxon Table
Taxonomic Hierarchy
Taxonomic Level
Identify 16S rRNA Sequence
BLAST Sequence(s)
Download 16S rDNA RefSeq & Taxonomy
Genomes
Taxa with Annotated Genomes
All Oral Genomes
All Genomes
Proteomes
Download Proteomic Data
Tools & Download
HOMD JBrowse Genome Viewer
»
Select an HOMD genome to view in JBrowse
Upload your own reference sequence
HOMD only!
Demo - See Jbrowse in action.
HOMD Genome Viewer (Old Version)
Dynamic Genome Annotation
BLAST Against HOMD Genomes
»
BLAST against a selected human oral microbial genome
BLAST against all human oral microbial genomes
BLAST against all HOMD annotated human oral microbial genomes
Dynamic Genome BLAST
Download HOMD Data
HOMD FTP Site
HOMD Posters
Oralgen Archive
Oralgen Archive
Oralgen Genome Info
HOMD Information
How to Cite HOMD
Project Description
Strains and DNA Availability
People
Contact Us
Mailing List
Usage Statistics
Site Map
How to Use This Page
User's Guide
Hands on Guide to HOMD
Quick Tour to HOMD 2015
Page: HP1
HOMD Genomes
Navigate genomes by Phylum:
Select a phylum
Actinobacteria
Bacteroidetes
Chlamydiae
Chloroflexi
Euryarchaeota
Firmicutes
Fusobacteria
GN02
Proteobacteria
Spirochaetes
SR1
Synergistetes
Tenericutes
TM7
Navigate genomes by alphabet:
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
|
All Entries
:
1515
genomes
genomes:
Options [+]
In:
All fields
Taxon ID
Genus
Species
Culture collection
Isolation origin
Sequence status
Sequence center
SEQ ID
Matching
ALL words
ANY words
Exact phrase
Partial field
Whole field
Sequencing Status:
All
Complete
High Coverage
Survey
Annotation:
All
HOMD with Static
HOMD only
Static only
Non-oral/nasal
No. of genomes starting with
R
:
20
Taxon ID *
Genus *
Species *
Strain/Culture
Collection *
SEQ ID *
No. of
contigs
& singlets *
Combined
length (bp) *
Tools & Links
854
Ralstonia
pickettii
DTP0602
2603
3
8,125,850
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
854
Ralstonia
pickettii
12D
1977
5
5,685,358
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
KEGG
GO
Seq Download
Seq Meta Info
Taxon Desc
854
Ralstonia
pickettii
OR214
2514
46
5,480,587
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
854
Ralstonia
pickettii
12J
2172
3
5,325,729
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
857
Rhodobacter
capsulatus
YW1
2623
54
3,653,919
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
857
Rhodobacter
capsulatus
DE442
2620
40
3,760,501
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
857
Rhodobacter
capsulatus
Y262
2622
54
3,850,334
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
857
Rhodobacter
capsulatus
B6
2619
116
3,811,946
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
857
Rhodobacter
capsulatus
YW2
2624
65
3,777,626
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
857
Rhodobacter
capsulatus
R121
2621
39
3,766,673
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
857
Rhodobacter
capsulatus
SB 1003
1980
2
3,871,920
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
KEGG
GO
Seq Download
Seq Meta Info
Taxon Desc
244
Roseomonas
gilardii
u14_5
2908
5
5,412,463
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
245
Roseomonas
mucosa
au37
2894
249
4,741,248
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
188
Rothia
aeria
F0184
1688
83
2,598,088
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
188
Rothia
aeria
F0474
1901
50
2,584,293
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
KEGG
GO
Seq Download
Seq Meta Info
Taxon Desc
587
Rothia
dentocariosa
M567
1994
26
2,522,580
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
KEGG
GO
Seq Download
Seq Meta Info
Taxon Desc
587
Rothia
dentocariosa
ATCC 17931
1925
1
2,506,025
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
KEGG
GO
Seq Download
Seq Meta Info
Taxon Desc
681
Rothia
mucilaginosa
DY-18
1724
1
2,264,603
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
KEGG
GO
Seq Download
Seq Meta Info
Taxon Desc
681
Rothia
mucilaginosa
M508
2197
18
2,310,168
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
Seq Meta Info
Taxon Desc
681
Rothia
mucilaginosa
ATCC 25296
1039
25
2,255,158
Dynamic Annotation
Static Annotation
Genome Viewer
BLAST
Others
KEGG
GO
Seq Download
Seq Meta Info
Taxon Desc
* Click to toggle the sorting order.
Data last updated on :2018-12-26 15:44:33
Copyright 2007-2019 The Forsyth Institute