HOMD :: Human Oral Microbiome Database

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Page: HP1

16S rRNA Refseq V15.2 Genomic RefSeq V9.03

HOMD Genomes

Navigate genomes by Phylum:

Navigate genomes by alphabet:
A|B|C|D|E|F|G|H|I|J|K|L|M|N|O|P|Q|R|S|T|U|V|W|X|Y|Z|All Entries: 1558 genomes

genomes: Options [+]
In: Matching
	Sequencing Status: All Complete High Coverage Survey
	Annotation: All HOMD with StaticHOMD onlyStatic onlyNon-oral/nasal

No. of genomes starting with C: 211

Taxon ID*

Genus *

Species *

Strain/Culture
Collection *

SEQ ID *

No. of
contigs
& plasmids *

Combined
length (bp) *

GC
(%)

Genome Info and Tools

Available Annotations

HMT-994

Caldilinea

aerophila

DSM 14535 = NBRC 104270

SEQF2717

5,144,873

58.8

HOMD

Campylobacter

concisus

ATCC 51561

SEQF2578

1,995,701

39.6

HOMD

Campylobacter

concisus

strain 13826

SEQF1177

2,099,413

39.3

HOMD

Campylobacter

concisus

UNSW1

SEQF2580

1,937,132

39.5

HOMD

Campylobacter

concisus

ATCC 51562

SEQF2579

1,841,750

37.7

HOMD

Campylobacter

concisus

UNSWCD

SEQF2326

1,778,912

39.8

HOMD

Campylobacter

curvus

DSM 6644

SEQF2488

1,954,904

44.3

HOMD

Campylobacter

curvus

525.92

SEQF1178

1,971,270

44.5

HOMD

Campylobacter

gracilis

RM3268

SEQF2434

2,255,573

46.6

HOMD

Campylobacter

gracilis

ATCC 33236

SEQF1005

384

402,378

46.2

NCBI

HOMD

HMT-748

Campylobacter

rectus

ATCC 33238

SEQF1089

356

353,298

44.9

NCBI

HOMD

HMT-748

Campylobacter

rectus

RM3267

SEQF1575

2,513,107

44.9

HOMD

Campylobacter

showae

RM3277

SEQF1731

2,072,007

45.7

HOMD

Campylobacter

showae

CSUNSWCD

SEQF2416

2,125,173

45.1

HOMD

Campylobacter

showae

ATCC 51146

SEQF1091

352

339,586

44.1

NCBI

HOMD

HMT-763

Campylobacter

showae

CC57C

SEQF2476

273

2,187,351

45.4

HOMD

Campylobacter

sputorum

INTA08/209

SEQF3088

1,780,580

29.1

HOMD

Campylobacter

ureolyticus

ACS-301-V-Sch3b

SEQF2613

1,698,455

29.6

HOMD

Campylobacter

ureolyticus

DSM 20703

SEQF2614

1,740,590

28.9

HOMD

Candidate division TM7

bacterium

JGI 0001002-L20

SEQF2723

752,653

46.4

HOMD

Candidate division TM7

genomosp.

GTL1

SEQF2722

132

679,415

48.5

HOMD

Candidatus Saccharibacteria

bacterium

RAAC3_TM7_1

SEQF2737

845,464

49.4

HOMD

Candidatus Saccharimonas

aalborgensis

SEQF2721

1,013,781

48.5

HOMD

Capnocytophaga

gingivalis

ATCC 33624

SEQF1602

2,667,138

40.5

HOMD

Capnocytophaga

granulosa

ATCC 51502

SEQF1653

2,746,278

41.6

HOMD

Capnocytophaga

haemolytica

CCUG 32990

SEQF2788

2,688,484

44.2

HOMD

Capnocytophaga

leadbetteri

F0087

SEQF1684

141

2,536,778

41.9

HOMD

Capnocytophaga

ochracea

DSM 7271, ATCC 27872, JCM 12966

SEQF1008

2,612,925

39.6

HOMD

Capnocytophaga

ochracea

str. Holt 25

SEQF2387

2,653,757

39.5

HOMD

Capnocytophaga

ochracea

F0287

SEQF1006

2,663,545

40.1

HOMD

Capnocytophaga

sp. HMT 323

F0383

SEQF2747

2,614,527

39.7

HOMD

Capnocytophaga

sp. HMT 324

F0483

SEQF1938

2,739,607

39.4

HOMD

Capnocytophaga

sp. HMT 326

F0382

SEQF1900

127

3,218,123

38.6

HOMD

Capnocytophaga

sp. HMT 332

F0381

SEQF1937

103

2,656,035

38.5

HOMD

Capnocytophaga

sp. HMT 335

F0486

SEQF1906

2,545,989

39.6

HOMD

Capnocytophaga

sp. HMT 336

F0502

SEQF1970

2,788,212

39.5

HOMD

Capnocytophaga

sp. HMT 338

F0234

SEQF1687

2,548,422

38.4

HOMD

Capnocytophaga

sp. HMT 380

F0488

SEQF1950

2,634,285

39.5

HOMD

Capnocytophaga

sp. HMT 412

F0487

SEQF1909

2,590,781

39.5

HOMD

Capnocytophaga

sp. HMT 863

F0517

SEQF2319

103

2,724,306

41.8

HOMD

Capnocytophaga

sp. HMT 864

F0512

SEQF3058

2,682,541

39.5

HOMD

Capnocytophaga

sp. HMT 878

F0545

SEQF3059

2,990,835

38.0

HOMD

Capnocytophaga

sputigena

ATCC 33612

SEQF1576

2,997,845

38.4

HOMD

Cardiobacterium

hominis

ATCC 15826

SEQF1604

2,642,494

60.3

HOMD

Cardiobacterium

valvarum

F0432

SEQF1860

2,553,535

58.3

HOMD

Catonella

morbi

ATCC 51271

SEQF1596

3,479,204

37.2

HOMD

Centipeda

periodontii

DSM 2778

SEQF1958

2,761,262

56.7

HOMD

Chlamydophila

pneumoniae

LPCoLN

SEQF1399

1,248,550

40.5

HOMD

Chlamydophila

pneumoniae

CWL029

SEQF1180

1,230,230

40.6

HOMD

Chlamydophila

pneumoniae

TW-183

SEQF1182

1,225,935

40.6

HOMD

Chlamydophila

pneumoniae

AR39

SEQF1179

1,234,385

40.6

HOMD

Chlamydophila

pneumoniae

J138

SEQF1181

1,226,565

40.6

HOMD

Chlorobium

limicola

DSM 245

SEQF2718

2,763,181

51.3

HOMD

Clostridiales [F-3][G-1]

bacterium HMT 876

F0540

SEQF2456

4,767,532

33.0

HOMD

Comamonas

testosteroni

S44

SEQF2058

112

5,534,155

61.4

HOMD

Comamonas

testosteroni

KF-1

SEQF1981

6,026,527

61.8

HOMD

Comamonas

testosteroni

ATCC 11996

SEQF2057

5,410,155

61.5

HOMD

Comamonas

testosteroni

CNB-2

SEQF2047

5,373,644

61.4

HOMD

Corynebacterium

accolens

kpl1814

SEQF2988

2,501,004

59.5

HOMD

Corynebacterium

accolens

kpl1998

SEQF3026

2,568,130

59.3

HOMD

Corynebacterium

accolens

kpl2004

SEQF2953

2,575,948

59.4

HOMD

Corynebacterium

accolens

kpl1855

SEQF2935

2,512,083

59.7

HOMD

Corynebacterium

accolens

kpl1859

SEQF2940

2,547,767

59.6

HOMD

Corynebacterium

accolens

kpl1996

SEQF3027

2,576,022

59.3

HOMD

Corynebacterium

accolens

kpl1986

SEQF2937

2,568,149

59.4

HOMD

Corynebacterium

accolens

kpl1818

SEQF2986

2,588,539

59.5

HOMD

Corynebacterium

accolens

kpl1824

SEQF2954

2,638,979

59.4

HOMD

Corynebacterium

afermentans

lcdc880199

SEQF2886

2,345,615

64.9

HOMD

Corynebacterium

amycolatum

hmsc065h09

SEQF3020

2,493,204

59.0

HOMD

Corynebacterium

amycolatum

hmsc055g02

SEQF3015

2,410,671

58.9

HOMD

Corynebacterium

amycolatum

hfh0082

SEQF3012

2,493,224

59.2

HOMD

Corynebacterium

amycolatum

hmsc14b06

SEQF2956

2,562,236

60.1

HOMD

Corynebacterium

amycolatum

hmsc077g01

SEQF3034

2,461,778

58.8

HOMD

Corynebacterium

amycolatum

hmsc077g07

SEQF3031

2,430,573

58.8

HOMD

Corynebacterium

amycolatum

hmsc064e08

SEQF2942

2,436,100

59.0

HOMD

Corynebacterium

amycolatum

hmsc061h03

SEQF3028

2,482,958

58.8

HOMD

Corynebacterium

amycolatum

hmsc064h12

SEQF3024

2,458,128

58.9

HOMD

Corynebacterium

amycolatum

hmsc064e10

SEQF2979

2,460,166

58.8

HOMD

Corynebacterium

amycolatum

hmsc063a05

SEQF2975

2,444,943

58.7

HOMD

Corynebacterium

amycolatum

hmsc072b09

SEQF3014

2,484,283

58.9

HOMD

Corynebacterium

amycolatum

hmsc064e07

SEQF2967

2,450,517

59.0

HOMD

Corynebacterium

amycolatum

hmsc14h10

SEQF3037

2,490,969

58.9

HOMD

Corynebacterium

amycolatum

hmsc070b05

SEQF2949

2,417,058

59.0

HOMD

Corynebacterium

amycolatum

hmsc074c04

SEQF2996

2,442,160

58.8

HOMD

Corynebacterium

amycolatum

hmsc073h12

SEQF3033

2,473,368

58.7

HOMD

Corynebacterium

amycolatum

hmsc074c11

SEQF3017

2,456,959

58.7

HOMD

Corynebacterium

amycolatum

atcc_6931

SEQF2910

2,471,920

58.6

HOMD

Corynebacterium

amycolatum

hmsc072b08

SEQF3013

2,489,149

59.0

HOMD

Corynebacterium

amycolatum

hmsc063g05

SEQF2964

2,409,263

58.9

HOMD

Corynebacterium

amycolatum

hmsc11h10

SEQF3006

2,433,278

58.7

HOMD

Corynebacterium

amycolatum

hmsc077c02

SEQF2951

2,436,086

59.0

HOMD

Corynebacterium

amycolatum

hmsc074c05

SEQF2995

2,409,687

58.9

HOMD

Corynebacterium

amycolatum

hmsc063f04

SEQF2992

2,425,142

58.9

HOMD

Corynebacterium

appendicis

CIP_107643,DSM_44531

SEQF2915

2,248,056

64.3

HOMD

Corynebacterium

aurimucosum

hmsc078a10

SEQF2939

2,761,821

60.9

HOMD

Corynebacterium

aurimucosum

hmsc066c02

SEQF2936

2,631,066

60.7

HOMD

Corynebacterium

aurimucosum

hmsc062a03

SEQF2981

2,606,195

60.6

HOMD

Corynebacterium

aurimucosum

hmsc070e08

SEQF2971

2,725,857

61.1

HOMD

Corynebacterium

aurimucosum

hmsc056f09

SEQF3048

2,758,830

61.2

HOMD

Corynebacterium

aurimucosum

hmsc035e02

SEQF3045

2,767,129

61.1

HOMD

Corynebacterium

aurimucosum

hmsc072a02

SEQF3042

2,753,344

60.9

HOMD

Corynebacterium

aurimucosum

hmsc074e01

SEQF2950

2,654,499

60.9

HOMD

Corynebacterium

aurimucosum

hmsc056e09

SEQF2991

2,672,238

61.0

HOMD

Corynebacterium

aurimucosum

hmsc036d02

SEQF2938

2,639,433

60.9

HOMD

Corynebacterium

aurimucosum

hmsc055a01

SEQF3019

2,818,382

61.0

HOMD

Corynebacterium

aurimucosum

hmsc078c09

SEQF3010

2,669,014

61.1

HOMD

Corynebacterium

aurimucosum

hmsc074c01

SEQF3001

2,693,142

60.9

HOMD

Corynebacterium

aurimucosum

hmsc072d12

SEQF2944

2,566,381

60.8

HOMD

Corynebacterium

aurimucosum

hmsc074h12

SEQF2989

2,810,041

61.0

HOMD

Corynebacterium

aurimucosum

hmsc05d03

SEQF3009

2,642,799

60.6

HOMD

Corynebacterium

aurimucosum

hmsc072a04

SEQF3046

2,804,419

61.1

HOMD

Corynebacterium

aurimucosum

hmsc069e04

SEQF3043

2,642,255

60.7

HOMD

Corynebacterium

aurimucosum

hmsc065d07

SEQF2948

2,658,959

61.0

HOMD

Corynebacterium

aurimucosum

hmsc068g04

SEQF3032

2,793,519

61.0

HOMD

Corynebacterium

bovis

DSM 20582

SEQF3082

503

2,522,962

72.6

HOMD

Corynebacterium

coyleae

hmsc11d10

SEQF2907

2,443,105

61.7

HOMD

Corynebacterium

coyleae

hmsc034b08

SEQF2968

101

2,519,128

61.8

HOMD

Corynebacterium

coyleae

hmsc067d03

SEQF3008

2,390,972

61.7

HOMD

Corynebacterium

coyleae

hmsc05c01

SEQF2962

2,390,226

61.7

HOMD

Corynebacterium

coyleae

hmsc075d04

SEQF3038

2,461,261

61.6

HOMD

Corynebacterium

coyleae

hmsc034e11

SEQF2945

2,423,872

61.7

HOMD

Corynebacterium

coyleae

hmsc036e10

SEQF3007

2,468,155

61.5

HOMD

Corynebacterium

coyleae

hmsc070h05

SEQF3004

2,411,300

61.7

HOMD

Corynebacterium

coyleae

hmsc08f01

SEQF2957

2,413,488

61.6

HOMD

Corynebacterium

coyleae

hmsc055d05

SEQF3003

2,396,802

61.6

HOMD

Corynebacterium

diphtheriae

C7 (beta)

SEQF2269

2,499,189

53.5

HOMD

Corynebacterium

diphtheriae

241

SEQF2048

2,426,551

53.4

HOMD

Corynebacterium

diphtheriae

DSM 43988

SEQF2703

140

2,141,743

53.3

HOMD

Corynebacterium

diphtheriae

VA01

SEQF2277

2,395,441

53.4

HOMD

Corynebacterium

diphtheriae

HC04

SEQF2274

2,484,332

53.5

HOMD

Corynebacterium

diphtheriae

HC01

SEQF2271

2,427,149

53.4

HOMD

Corynebacterium

diphtheriae

BH8

SEQF2268

2,485,519

53.6

HOMD

Corynebacterium

diphtheriae

NCTC 13129

SEQF1184

2,488,635

53.5

HOMD

Corynebacterium

diphtheriae

PW8

SEQF2276

2,530,683

53.7

HOMD

Corynebacterium

diphtheriae

HC03

SEQF2273

2,478,364

53.5

HOMD

Corynebacterium

diphtheriae

CDCE 8392

SEQF2270

2,433,326

53.6

HOMD

Corynebacterium

diphtheriae

31A

SEQF2267

2,535,346

53.6

HOMD

Corynebacterium

diphtheriae

str. Aberdeen

SEQF2704

2,367,453

53.5

HOMD

Corynebacterium

diphtheriae

bv. intermedius str. NCTC 5011

SEQF2388

2,380,361

53.6

HOMD

Corynebacterium

diphtheriae

INCA 402

SEQF2275

2,449,071

53.7

HOMD

Corynebacterium

diphtheriae

HC02

SEQF2272

2,468,612

53.7

HOMD

Corynebacterium

durum

F0235

SEQF1897

2,809,576

56.9

HOMD

Corynebacterium

jeikeium

hmsc058e07

SEQF3023

2,223,736

62.1

HOMD

Corynebacterium

jeikeium

hmsc08a12

SEQF2978

2,215,784

63.0

HOMD

Corynebacterium

kroppenstedtii

dsm_44385

SEQF2862

2,446,804

57.5

HOMD

Corynebacterium

massiliense

DSM 45435

SEQF3085

2,183,019

65.0

HOMD

Corynebacterium

mastitidis

DSM 44356

SEQF3083

2,370,005

69.0

HOMD

Corynebacterium

matruchotii

ATCC 33806

SEQF1648

2,992,255

57.3

HOMD

Corynebacterium

matruchotii

ATCC 14266

SEQF1013

2,855,988

57.1

HOMD

Corynebacterium

minutissimum

atcc_23348

SEQF2878

2,663,401

60.0

HOMD

Corynebacterium

minutissimum

hmsc05e07

SEQF3047

2,797,062

60.0

HOMD

Corynebacterium

pilbarense

hmsc034a01

SEQF2998

2,393,833

65.4

HOMD

Corynebacterium

pilbarense

hmsc05h05

SEQF2969

2,411,621

65.3

HOMD

Corynebacterium

propinquum

DSM 44285

SEQF3081

2,458,635

56.4

HOMD

Corynebacterium

pseudodiphtheriticum

kpl1995

SEQF2911

2,313,371

55.4

HOMD

Corynebacterium

pseudodiphtheriticum

EPI_003_04_2554_SCH2473622

SEQF3041

2,366,960

55.4

HOMD

Corynebacterium

pseudodiphtheriticum

kpl1989

SEQF2972

2,317,860

55.4

HOMD

Corynebacterium

simulans

hmsc06g04

SEQF3029

2,627,043

59.1

HOMD

Corynebacterium

simulans

hmsc071f07

SEQF3005

2,574,878

59.4

HOMD

Corynebacterium

simulans

hmsc077d03

SEQF3002

2,636,380

59.3

HOMD

Corynebacterium

simulans

pes1

SEQF2866

2,737,971

59.0

HOMD

Corynebacterium

simulans

hmsc036d03

SEQF2961

2,652,130

59.1

HOMD

Corynebacterium

simulans

hmsc06d04

SEQF2955

2,672,576

59.0

HOMD

Corynebacterium

simulans

hmsc08c04

SEQF2952

2,657,712

59.1

HOMD

Corynebacterium

simulans

hmsc076d02

SEQF3036

2,638,185

59.2

HOMD

Corynebacterium

singulare

hmsc078h07

SEQF3039

2,768,062

59.8

HOMD

Corynebacterium

singulare

ibs_b52218

SEQF2846

2,830,519

60.1

HOMD

Corynebacterium

sp. HMT 207

nml_150383

SEQF3050

2,527,537

65.6

HOMD

Corynebacterium

sp. HMT 207

hmsc074a01

SEQF2851

2,549,445

64.8

HOMD

Corynebacterium

sp. HMT 207

nml_120412

SEQF3049

2,597,765

65.5

HOMD

Corynebacterium

sp. HMT 207

hmsc071b10

SEQF3040

2,625,963

64.4

HOMD

Corynebacterium

striatum

kc_na_01

SEQF2859

2,797,692

59.1

HOMD

Corynebacterium

striatum

hmsc05d08

SEQF3044

2,812,770

59.3

HOMD

Corynebacterium

striatum

hmsc06c06

SEQF2999

2,652,216

59.4

HOMD

Corynebacterium

tuberculostearicum

kpl1856

SEQF2977

2,465,753

58.7

HOMD

Corynebacterium

tuberculostearicum

kpl1857

SEQF2994

2,489,851

58.5

HOMD

Corynebacterium

tuberculostearicum

og2

SEQF2987

472

2,628,783

57.5

HOMD

Corynebacterium

tuberculostearicum

kpl1860

SEQF2993

2,484,887

58.5

HOMD

Corynebacterium

tuberculostearicum

kpl1817

SEQF3030

2,453,143

58.6

HOMD

Corynebacterium

tuberculostearicum

sk141

SEQF2882

2,372,261

60.0

HOMD

Corynebacterium

tuberculostearicum

kpl1821

SEQF2943

2,470,873

58.7

HOMD

Corynebacterium

tuscaniense

DNF00037

SEQF2784

2,227,780

59.6

HOMD

Corynebacterium

urealyticum

hmsc27b11

SEQF2912

2,193,273

65.1

HOMD

Corynebacterium

urealyticum

DSM 7109

SEQF1976

2,369,219

64.2

HOMD

Corynebacterium

urealyticum

hmsc22b11

SEQF2970

2,305,457

64.9

HOMD

Corynebacterium

urealyticum

DSM 7111

SEQF2440

2,316,065

64.2

HOMD

Cronobacter

sakazakii

SP291

SEQF2692

4,518,784

56.8

HOMD

Cronobacter

sakazakii

680

SEQF2669

201

4,362,758

56.8

HOMD

Cronobacter

sakazakii

ES15

SEQF2691

4,268,675

57.1

HOMD

Cronobacter

sakazakii

ATCC BAA-894

SEQF1185

4,530,777

56.7

HOMD

Cronobacter

sakazakii

CMCC 45402

SEQF2690

4,559,945

56.8

HOMD

Cryptobacterium

curtum

DSM 15641, ATCC 700683, 12-3T

SEQF1480

1,617,804

50.9

HOMD

Cupriavidus

gilardii

cr3

SEQF2854

5,578,743

67.6

HOMD

Cutibacterium

acnes

ATCC 11828

SEQF2163

2,488,626

60.0

HOMD

Cutibacterium

acnes

KPA171202, DSM 16379

SEQF1286

2,560,265

60.0

HOMD

Cutibacterium

acnes

SK182

SEQF2190

2,477,348

60.1

HOMD

Cutibacterium

acnes

TypeIA2 P.acn31

SEQF2165

2,498,766

60.0

HOMD

Cutibacterium

acnes

6609

SEQF2162

2,560,282

60.0

HOMD

Cutibacterium

acnes

J139

SEQF1801

2,481,963

60.1

HOMD

Cutibacterium

acnes

SK187

SEQF2192

2,510,934

59.9

HOMD

Cutibacterium

acnes

J165

SEQF2189

2,500,083

60.0

HOMD

Cutibacterium

acnes

TypeIA2 P.acn17

SEQF2164

2,522,885

60.1

HOMD

Cutibacterium

acnes

266

SEQF2161

2,494,578

60.0

HOMD

Cutibacterium

acnes

SK137

SEQF1014

2,495,334

60.1

HOMD

Cutibacterium

acnes

SK182B-JCVI

SEQF2191

2,430,672

60.2

HOMD

Cutibacterium

acnes

TypeIA2 P.acn33

SEQF2166

2,489,623

60.0

HOMD

Cutibacterium

avidum

ATCC 25577

SEQF1990

2,553,960

63.7

HOMD

Cutibacterium

avidum

44067

SEQF2522

2,526,138

63.5

HOMD

Cutibacterium

granulosum

DSM_20700

SEQF2902

372

2,128,234

64.1

HOMD

Cutibacterium

sp. HMT 193

F0672

SEQF3064

2,649,207

60.0

HOMD

Cutibacterium

sp. HMT 193

F0672

SEQF2808

2,649,207

60.0

HOMD

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Data last updated on :2020-06-05 14:44:35

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